Results: PF09887
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 4bgb-B 18.5 3.8 267 315 13 PDB MOLECULE: PUTATIVE SUGAR KINASE MK0840;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=4bgbB Z-score=18.5
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DSSP lEEEEEEEEELLLEEEEEEEEEElllllEEEEEEEEEEHhhllllllllleeeeLLLLL- Query pYYIVASVELGNTTTKSIITATNmdtgkTYIVSKHVKMTrdvrkpkkgeevfgeTLWGV- 59 ident | |||| | Sbjct -LTRVLGIQLGNTGTDYCVMNED-----GDWEIVAREEG---------------VFGKIs 39 DSSP -LLEEEEEEELLLEEEEEEEELL-----LLEEEEEEEEL---------------LLLLLl DSSP ---------EEEHHHHHHHHHHHHHHHHhhhlllhhhLLEEEEEELLhhhlllhhhHHHH Query ---------ELTREAVADMVKEVLLESLkkagltvddLHFVVRSTGVtagfaspeeVGEM 110 ident || | | | | | | Sbjct cvftleesrRALREEIAPRVIERVRRVN---------PDLAVVGTIV---------DELG 81 DSSP llllhhhhhHHHHHLHHHHHHHHHHHHL---------LLEEEEEELL---------HHHH DSSP HHhHHHHHHHLLllHHHHlllllhhhllhhhhhhlllllllllllllleelllllLLLLL Query IIaLAQGCMKAGvpPAKMtpamtkeqipkpfdkysfldkiifdgavtgvlpptgkEVVAN 170 ident | | | Sbjct LI-LGPMIHEKT--GVPT-------------------------------lavygdPWGAP 107 DSSP HH-HHHHHHHHH--LLLE-------------------------------eeelllLLLLL DSSP HHHHHHHHHHHHhhhhhllllLLLLEEEEEELLLEELEEELLllllEEEE--EEEEELLH Query EMEGELVTAGIKvgskwtdvdFRNPCMSIDFGTTLAGRITNDtlpyAKVI--GNLCGLAG 228 ident | | | | Sbjct DGDAVGAPYCVA--------eEYPNCVHVDVGAMAVVTPIRD----GRPDfgDAVVSVGT 155 DSSP LHHHLHHHHHHH--------lLLLLEEEEEELLEEEEEEEEL----LEELllLLEEEELL DSSP HHHHHHHHLLLLLllllLLHHhhlllllLLLHhhHHHHHHHHHLL-------EEEEELll Query AIADAIARGSGKIdektGAALdlanikgKPNEelAKEYAEEMHKY-------IIIKEVpk 281 ident | || | Sbjct FPLDLAARELLGK----EYDE-ggkkaaEGEV--DENFRRELRSVdvdgkpvFGRVRG-- 206 DSSP HHHHHHHHHHHLL----LLLH-hhhhhhLLLL--LHHHHHHHHLLeelleelLLLLLL-- DSSP llleelleellhhhhhhhlleeEEEEelllLLLHHHHHHHHHHHhhHLLHHHHHHHHHHH Query dvdrfgtvpvdpksaekagttlIGCDvgknGSDLIKLEELGRELveKSDIPTLMCCLDYV 341 ident | | | Sbjct ----------------------SLAP--vpPEQERVLRDHIRDA--GAPAEDVLRTLVEL 240 DSSP ----------------------LLLL--lhHHHHHHHHHHHHHL--LLLHHHHHHHHHHH DSSP HHHHHHHHHHHHHhlllllllLEEEEELHHHHLLLHHHHHHHHHHlllllllhhhLEEEL Query MSEVVRRLVELAYkkglisekSAVGITGRAGITGRKPELIIEKLKtleiwdkveeNVVFV 401 ident | | | | Sbjct VAETIVINAAQYD-------mDLLVLSGGGVKNELLKRRVSELWE---------gDVSIF 284 DSSP HHHHHHHHHHHHL-------lLEEEEELHHHHLHHHHHHHHHHLL---------lEEEEL DSSP --LLHHHHHHHHHHHHHLLLLlllllllllllllllhhhhhhhl Query --EDGLALGASVMARCMNCLGtpqvpiggvrgggcilglrrkwq 443 ident | | | Sbjct agEELEARGLCLLGLRYLEGE-------------pvpalpcegg 315 DSSP llLLHHHHHHHHHHHHHHLLL-------------llleeeelll
