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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
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and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7fh1-A 42.6 2.1 738 874 62 PDB MOLECULE: MECKELIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7fh1A Z-score=42.6
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct qtfsfpfqqpekcdnnqyfdisalscvpcganqrqdargtscvclpgfqmisnnggpaii 60 DSSP llleeelllhhhlllleeelllllleeelllleeelllllleeellleeeeellllllle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct ckkcpenmkgvtedgwnciscpsdltaegkchcpighilverdingtllsqatcelcdgn 120 DSSP eeellllllllllllllllllllllllllllllllleeelllllllllllllleeellll DSSP ----------LLLLLLLLHHHHHHHLLLLLLLLEEEELLEEEEL--LLLLLLLLLEEEEl Query ----------GNRCERCGDSFINSSQSCVCGTSNTLAGGMCFPA--NSLPTSVASSVIFs 48 ident | || || | | | || | | | || || | Sbjct ensfmvvnalGDRCVRCEPTFVNTSRSCACSEPNILTGGLCFSStgNFPLRRISAARYG- 179 DSSP llllleelllLLLEELLLHHHHHHLLLLLLLLLLEEELLEEELLllLLLLLLLLLLEEL- DSSP LLLEEEELHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHH Query QLTLPVQSAWFSSFMYSSAAACLLFSNRTACQSLGNMCVMNMHSSSSINNDVCGLYNTIY 108 ident | || |||||| | | || ||||||||| | | ||| | Sbjct EVGMSLTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYDFATFDACGLFQFIF 239 DSSP LLLLEELLHHHHHHLHHHHHHHHLLLLHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHH DSSP HHHHHHLLHHHLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLLLLLEEEE Query RTTAAQGSSQDISYWRTNLPWLYYGDQPGMASQALQNEPLPVGFSFKGAQKNTNIELRAA 168 ident || || || ||||| |||| | | | | || ||||| || || Sbjct ENTAGLSTVHSISFWRQNLPWLFYGDQLGLAPQVLSSTSLPTNFSFKGENQNTKLKFVAA 299 DSSP HHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLEEEE DSSP EELLLLLEEEEEEELLLLLLLLLLLHHHHHHHHLLLLLEEEEEEEEHHHHHHHLLLLLEE Query VYSVRGEFLRWESVGRGNLQLCPDTPTRQQSAFKFGTAYKQSCVLSVSELLTGYPEPLFY 228 ident | || || | | ||||||| || | ||| | | | | | | | || Sbjct SYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILIDFPTPIFY 359 DSSP EELLLLLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLEEELLLLHHHHHHHLLLLLEE DSSP EEEEEELLL-LLLEEEELLEEELLLEELLEELLLLLLHHHLLLLLEEELEELLLLLLLLL Query DVFLVIQNS-QDNRLLAVPLLNANQQFNGQFVNQGSDMSKWFLTRRLMLVDTLSGREKSI 287 ident || | | |||| || | | | |||| | || |||| ||| |||| Sbjct DVYLEYTDEnQHQYILAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDL 419 DSSP EEEEEEELLlLLEEEEELLEELLLLLLLLLLLLLLLLLLLLLEELLLLLEELLLLLLLLL DSSP LLLLLEEEEEEEEEEEEELLLLLLLLLLLLLEEEEEEEEEELLLLLLLEEEEEEEEEEEL Query SSSPVVIRVASDIKIGFQLVPNTQKGQVYPPLMSVAYSDIQIKDPSTQTVTVTFSVEYTM 347 ident | ||||| | ||||| | |||| ||||| ||| | | | ||| | | Sbjct GTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIAYSDIDIKDANSQSVKVSFSVTYEM 479 DSSP LLLLLLLEEEEELLEEEELLLLLLLLLLLLLEELLEEELLLLLLLLLLLLLLEEEEEEEL DSSP LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHH Query NQEEARIKTDIALGVLGGVAVVHSLLKTASWKRRIASPLIDLETIMKFLVFYAGDLANVF 407 ident || |||||||||| || |||||| ||||| || ||| | |||| ||||||||| Sbjct DHGEAHVQTDIALGVLGGLAVLASLLKTAGWKRRIGSPMIDLQTVVKFLVYYAGDLANVF 539 DSSP LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHH DSSP HHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLE Query FIITVGTGLYWLIFFKAQLFVSVLLPLPAQEERFVVYVGCAFALKTVQFLHKIFVQLSVD 467 ident |||||||||||||||||| |||||| | |||||| ||||||||| ||||| | | Sbjct FIITVGTGLYWLIFFKAQKSVSVLLPMPIQEERFVTYVGCAFALKALQFLHKLISQITID 599 DSSP HHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLE DSSP EEEEELllllleeelllllllllleeelllLLHHHHHHHHHHHHHLLLLLLLHHHHHHHH Query VFFIDWerprgkttkhvegsgetksqaspvSIWRTYFVANEWNEIQTIRKINPTFQVMAV 527 ident |||||| ||||||||||||||||| |||| ||| | Sbjct VFFIDW----------------------erSIWRTYFVANEWNEIQTVRKINSLFQVLTV 637 DSSP EEEELL----------------------llLHHHHHHHHHHHHHLLLLLLLLHHHHHHHH DSSP HHHHHLLLHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLH Query LFFLEVVGFSNLALRDPSSNLNRSAEEYTPPYSLILRYGVATAMWLCIGLIQMIFFTVFH 587 ident ||||||||| |||| | || | | | ||| |||| | | || || || || || Sbjct LFFLEVVGFKNLALMDSSSSLSRNPPSYIAPYSCILRYAVSAALWLAIGIIQVVFFAVFY 697 DSSP HHHHHLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHH DSSP HHHLLLHHHHHHHHHHHLLEEEEEEEELLEEEEELlllllllllllhhhhhhhhhhhhll Query ERFVEDKIRQFVDLCSISNISVLLLSHRCFGYYIHgrsvhghadtnmdemntnlkreaen 647 ident ||| |||||||||||| ||||| |||| ||||||| Sbjct ERFIEDKIRQFVDLCSMSNISVFLLSHKCFGYYIH------------------------- 732 DSSP HHLLLLHHHHHHHHHHLLLLEEEEELLLLLLLLLL------------------------- DSSP lllllllllllLLLEEEEELLHHHHHHHHHHHHhhhhlllllllllllllhhHHHHHHHH Query lcgqrgllpnsDTQTFQISITNRLRAQYDRIIEpisrrrgpsrlvdatanpcEQSTKAYH 707 ident ||| | | | | |||| | ||| |||| Sbjct ----------gRGQTFEIAISNQMRQHYDRIHE-------------------EQSIKAYH 763 DSSP ----------lLLLLEEELLLHHHHHHHHLLLL-------------------LHHHHHHH DSSP HHHHHHHHHHLLllhHHLEEEELLLHHHHHHLLLLLLLLLLEEEEELLLLHHHHHLLHHH Query TMNRFLGSVIDHahrEMDYIVKDKLLFERVIGMEFIEPLDKSIFYNDDSHSFADVLFYGN 767 ident || |||| ||| |||| ||||| || |||| || ||||||| || || ||| Sbjct MMNKFLGSFIDH---EMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGN 820 DSSP HHHHHHHHHHLL---LLLLLEEELLLLHHHHLLLLLLLLLLLLEEELLLLHHHHLLLLLL DSSP HHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLlhhhll Query EGVLLIFDTLFFCVVDLGKQNFILAAVLTYLQQMIFRLIRNGLGRRNLANKTLVdkrfli 827 ident | ||||| |||||||| |||||| |||||| ||| ||| | ||| |||| Sbjct EATLLIFDLLFFCVVDLACQNFILASFLTYLQQEIFRYIRNTVGQKNLASKTLV------ 874 DSSP HHHHHHHHHHLHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLL------
