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<TITLE>Dali: PF09725</TITLE><A name=s001A>
<h1>Results: PF09725</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="TDQDTLREGYRFIRSEEDDLDPSWEQRLVKRYYDKLFKEYCIADMSRYKTGKMGLRWRTEKEVMTGKGQFMCGSKHCDEKEGLASYEVNFSYHEAGEDKQALVKLVACERCAEKLYY"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LHHHHHHHHLLLLLLHHHHLLLLHHHHHHHHHHHHLEEEEEEEELLLHHHLLLEEEEELHHHHHHLLLLLLLLLLLLLLLLLEEEEEEEEEEEELLEEEEEEEEEEEEHHHHHHHLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5yugE sequence=KMCMNASCGTTSTveWKKGWPLRSGLLADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLHCGCIASKVTIELMDYGGVGCSTCACCHQLNLNTRGEN dssp=LLLLLLLLLLLLLllLEEEEELLLLLEEEELHHHHHHHHLLLHHHHHLLLLLLEEELLLLLLEEELLLHHHHHHLEELLLLLEELLLHHHLLLLLLLLLLLL qstarts=69,82,100 sstarts=0,15,23 lengths=13,8,17 u=0.103103,0.129039,-0.986265,0.821704,-0.569801,0.011350,-0.560510,-0.811588,-0.164780 t=-13,-28,49 segments=9-21,24-31,32-48 compnd=_B3_DOMAIN-CONTAINING_TRANSCRIPTION_REPRESSOR_VAL1>"   <A HREF=#alignment-1>1</A>:  5yug-E  2.6  3.1   38   102   16 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5yug&u=0.103103,0.129039,-0.986265,0.821704,-0.569801,0.011350,-0.560510,-0.811588,-0.164780&t=-13,-28,49">PDB</A>  MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1          

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5yugE Z-score=2.6</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lhhhhhhhhllllllhhhhllllhhhhhhhhhhhhleeeeeeeelllhhhllleeeeelh
Query tdqdtlregyrfirseeddldpsweqrlvkryydklfkeyciadmsryktgkmglrwrte   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  hhhhhllllLLLLLLLLLLLLL--EEEEEEEEeeeelleeeeEEEEEEEEHHHHHHHLL-
Query kevmtgkgqFMCGSKHCDEKEG--LASYEVNFsyheagedkqALVKLVACERCAEKLYY-  117
ident           ||    |                                | ||       
Sbjct ---------KMCMNASCGTTSTveWKKGWPLR----------SGLLADLCYRCGSAYESs   41
DSSP  ---------LLLLLLLLLLLLLllLEEEEELL----------LLLEEEELHHHHHHHHLl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  117
ident                                                             
Sbjct lfceqfhkdqsgwrecylcskrlhcgciaskvtielmdyggvgcstcacchqlnlntrge  101
DSSP  lhhhhhlllllleeelllllleeelllhhhhhhleellllleelllhhhlllllllllll


DSSP  -
Query -  117
ident  
Sbjct n  102
DSSP  l


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<H1>PF09725</H1>
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