Content-type: text/html

<TITLE>Dali: PF09317</TITLE><A name=s001A>
<h1>Results: PF09317</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

<form NAME="optionform" METHOD="POST" TARGET="_blank"/>
<input TYPE="hidden" NAME="title" VALUE="PF09317">
<input TYPE="hidden" NAME="jobid" VALUE=PF09317>
<input TYPE="hidden" NAME="query_sequence" VALUE="IRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDF"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHLLLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="279  514   515   516   517   518   519   520   521   522   523   524   525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540   541   542   543   544   545   546   547   548   549   550   551   552   553   554   555   556   557   558   559   560   561   562   563   564   565   566   567   568   569   570   571   572   573   574   575   576   577   578   579   580   581   582   583   584   585   586   587   588   589   590   591   592   593   594   595   596   597   598   599   600   601   602   603   604   605   606   607   608   609   610   611   612   613   614   615   616   617   618   619   620   621   622   623   624   625   626   627   628   629   630   631   632   633   634   635   636   637   638   639   640   641   642   643   644   645   646   647   648   649   650   651   652   653   654   655   656   657   658   659   660   661   662   663   664   665   666   667   668   669   670   671   672   673   674   675   676   677   678   679   680   681   682   683   684   685   686   687   688   689   690   691   692   693   694   695   696   697   698   699   700   701   702   703   704   705   706   707   708   709   710   711   712   713   714   715   716   717   718   719   720   721   722   723   724   725   726   727   728   729   730   731   732   733   734   735   736   737   738   739   740   741   742   743   744   745   746   747   748   749   750   751   752   753   754   755   756   757   758   759   760   761   762   763   764   765   766   767   768   769   770   771   772   773   774   775   776   777   778   779   780   781   782   783   784   785   786   787   788   789   790   791   792 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=3owaA sequence=avkggsflvdeitidqvftpedfssehkxiakttedfivnevlpeleyleqhefdrsvrllkeagelgllgadvpeeyggigldkvssaliaekfsraggfaithgahvgigslpivlfgneeqkkkylpllatgeklaayaltepgsgsdalgakttarlnaegthyvlngekqwitnsafadvfivyakidgehfsafivekdyagvstspeekkxgikcsstrtliledalvpkenllgeigkghiiafnilnigryklgvgtvgsakraveisaqyanqrqqfkqpiarfpliqeklanxaaktyaaessvyrtvglfesrxstlseeevkdgkavaasiaeyaiecslnkvfgsevldytvdegvqihggygfxaeyeierxyrdsrinrifegtneinrlivpGTFLRKAXKGelPLLQKAQKLQEELXXXeVGDEPLALQKYLVNNAKKIGLXVAGLAAQKYGKALDKEQEILVNIADIVSNLYAXESAVLRTEKAIkttglekNKQKVLYTEVFCQEAFNEIEAHAKETLIAVENGDXLRXXLSSLRKltRHTPLNVIPKKREIAAKILEDERYTV dssp=lllllhhhlllllhhhlllhhhllhhhhhhhhhhhhhhhhhlhhhhhhhllllhhhhhhhhhhhhhlllllllllhhhllllllhhhhhhhhhhhhhhlhhhhhhhhhhllllhhhhhhllhhhhhhhhhhhhhlllleeeelllllllllhhhllleeeellllleeeeeeeeeeeelllllleeeeeeeellleeeeeeeellllleeellllllllllllleeeeeeeeeeeehhheelllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhleelleehhhlhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhlhhhhhhhhllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhlllllhhhhhhhhhHHHHHHHHLLllLHHHHHHHHHHHHLLLlLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhllhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHhhLLLLLLHHHHHHHHHHHHHHHLLLLL qstarts=0,27,53,120,167,191 sstarts=409,421,438,511,558,580 lengths=10,16,66,45,22,4 u=0.596415,0.098046,-0.796665,0.434420,-0.874017,0.217658,-0.674958,-0.475901,-0.563870 t=-5,4,2 segments=417-426,429-444,449-514,522-566,569-590,591-594 compnd=_ACYL-COA_DEHYDROGENASE;>"   <A HREF=#alignment-1>1</A>:  3owa-A 11.6  3.3  163   584   12 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=3owa&u=0.596415,0.098046,-0.796665,0.434420,-0.874017,0.217658,-0.674958,-0.475901,-0.563870&t=-5,4,2">PDB</A>  MOLECULE: ACYL-COA DEHYDROGENASE;                                    

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=3owaA Z-score=11.6</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct avkggsflvdeitidqvftpedfssehkxiakttedfivnevlpeleyleqhefdrsvrl   60
DSSP  lllllhhhlllllhhhlllhhhllhhhhhhhhhhhhhhhhhlhhhhhhhllllhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct lkeagelgllgadvpeeyggigldkvssaliaekfsraggfaithgahvgigslpivlfg  120
DSSP  hhhhhhlllllllllhhhllllllhhhhhhhhhhhhhhlhhhhhhhhhhllllhhhhhhl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct neeqkkkylpllatgeklaayaltepgsgsdalgakttarlnaegthyvlngekqwitns  180
DSSP  lhhhhhhhhhhhhhlllleeeelllllllllhhhllleeeellllleeeeeeeeeeeell


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct afadvfivyakidgehfsafivekdyagvstspeekkxgikcsstrtliledalvpkenl  240
DSSP  lllleeeeeeeellleeeeeeeellllleeellllllllllllleeeeeeeeeeeehhhe


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct lgeigkghiiafnilnigryklgvgtvgsakraveisaqyanqrqqfkqpiarfpliqek  300
DSSP  elllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhleelleehhhlhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct lanxaaktyaaessvyrtvglfesrxstlseeevkdgkavaasiaeyaiecslnkvfgse  360
DSSP  hhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhlhhhhhhhhllhhhhhhhhhhhhh


DSSP  -------------------------------------------------LLLLLLHHHHh
Query -------------------------------------------------IRCHPYVLEEm   11
ident                                                             
Sbjct vldytvdegvqihggygfxaeyeierxyrdsrinrifegtneinrlivpGTFLRKAXKG-  419
DSSP  hhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhlllllhhhhhhhhhHHHHHHHHLL-


DSSP  hhhhlllhhhhhhhhhHHHHHHHHHHHHHHHHhhllllllllLLLLLLHHHHHHHHHHHH
Query eaaknndvnafdkllfKHIGHVGSNKVRSFWLgltrgltsstPTGDATKRYYQHLNRLSA   71
ident                                                        |    
Sbjct --------------elPLLQKAQKLQEELXXX---------eVGDEPLALQKYLVNNAKK  456
DSSP  --------------llLHHHHHHHHHHHHLLL---------lLLLLLLHHHHHHHHHHHH


DSSP  HHHHHHHHHHHHHLLHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHLL------lLHHHH
Query NLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEG------rNEADL  125
ident              |  |     |     || | ||       |            |    
Sbjct IGLXVAGLAAQKYGKALDKEQEILVNIADIVSNLYAXESAVLRTEKAIkttglekNKQKV  516
DSSP  HHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhllhhHHHHH


DSSP  HHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLllLLLLLLLHHHHHHHHHHH
Query PLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPtgRHYLAPSDKLDHKVAKIL  185
ident        | |    |      |    |               ||            |   
Sbjct LYTEVFCQEAFNEIEAHAKETLIAVENGDXLRXXLSSLRKltRHTPLNVIPKKREIAAKI  576
DSSP  HHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHhhLLLLLLHHHHHHHHHHHH


DSSP  HLLLhhHHHHllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhllllllllhhhh
Query QVPNatRSRIgrgqyltpsehnpvglleealvdviaadpihqrickelgknlpftrldel  245
ident       |                                                     
Sbjct LEDE--RYTV--------------------------------------------------  584
DSSP  HHHL--LLLL--------------------------------------------------


DSSP  hhhhhhlllllhhhhhhhhhhhhhhhhhhlllll
Query ahnalvkglidkdeaailvkaeesrlrsinvddf  279
ident                                   
Sbjct ----------------------------------  584
DSSP  ----------------------------------


</PRE>
</PRE>
<HR>
<script>

function openViewer() {
    document.optionform.action = "/cgi-bin/daliviewer/viewer.cgi";
    document.optionform.target = "_blank";
    document.optionform.submit();
    return true;
}

function poppush() {
        document.optionform.action = "/cgi-bin/daliviewer/test_poppush.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

function mview() {
	document.optionform.action = "/cgi-bin/daliviewer/strali.cgi";
	document.optionform.target = "_blank";
	document.optionform.submit();
}

function sans() {
        document.optionform.action = "/cgi-bin/daliviewer/call_sans.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

function sanspanz() {
        document.optionform.action = "/cgi-bin/daliviewer/call_sanspanz.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

</script>


<H1>PF09317</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
<PRE>
</PRE>
<PRE><IMG SRC=1.png>
<PRE>
<PRE>
</PRE>
<PRE><IMG SRC=2.png>
<PRE>