Content-type: text/html

<TITLE>Dali: PF08889</TITLE><A name=s001A>
<h1>Results: PF08889</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

<form NAME="optionform" METHOD="POST" TARGET="_blank"/>
<input TYPE="hidden" NAME="title" VALUE="PF08889">
<input TYPE="hidden" NAME="jobid" VALUE=PF08889>
<input TYPE="hidden" NAME="query_sequence" VALUE="QSNYIPWRGYFDLIAFVDEFIIYDDMQYTKRDWRNRNRIKTSQGLQWITVPVQVKGRFHQKIRETLIDGTDWAKAHWRALEFNYSAAAHFAEIADWLAPIYLEEQHTNLSLLNRRLLNAICSYLGISTRLANSWDYELADGKTERLANLCQQAAATEYVSGPSARSYVDERVFDELSIRVTWFDYDGYRDYKQLWGGFEPAVSILDLLFNVGAEAPDY"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLHHHHHHHHHLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEELLLLLLLLLLLLHHHLLLLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHLLLLEEEEHHHLLLLLLLHHHHHHHHHHLLLLEEEELHHHHHLLLHHHHHLLLLEEEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="218    8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   225 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4wbdA sequence=hmqltelsiknqnvfvqhyidgkeemssffdysihhkdmwrerledlssrffareelaayltsyhnkfgssamqsaieklkdpssaavvggqQAGLLtGPLYTIHKIISIivlakqqekelqvpviPIFWVAGEDHDLDEINFVHTSEENGPVKKKLPQSYWKKSSAASTSLDQEKCAAWIDDVFAAFEETDHTNTLLDNVKRclRESVTFTDFFELLIADLFQEEGLVLLNSgdPGIKkletamfqkilrendelaravsdqqafmrqagykpiiesgkeqanlfyeyederfliekdngrfvikeldlgwtrdelhthmeehperfsnnVVTRPLMQEFLIPTLAFIAGPGEINYWgeLKQAFAvmgFKMPPVMPRLNITILErhiekklaernislqdaiergtenqretyferqipeeftavmdqaksqieaihktvrqealkvdqsleplllknaafiqdqlqflertvmkrieekegyvlkdyerIQNSIkpllapqerIWNIMYYLNRYGpKFFTTFKNLPFSFQNQHQVVKL dssp=lleeeeellllllhhhhhhhhllhhhhhllllllllllhhhhhhhhhhlllllhhhhhhhhhhhhhhhllhhhhhhhhhlllllleeeeeeeLLLHHhLLHHHHHHHHHHhhhhhhhhhhhllleeEEEEELLLLLLHHHLLEEEEEELLEEEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHhhHLLLLHHHHHHHHHHHHHHHHLLEEEELllHHHHhhhhhhhhhhhhlhhhhhhhhhhhhhhhhhlllllllllllleeeeeeeelleeeeeeeelleeeehhhleeelhhhhhhhhhhlhhheeelLLLHHHHHHHHLLEEEEEELHHHHHHHhlLHHHHHhllLLLLLEEELLLEEEELhhhhhhhhhllllhhhhhhhllhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlhhhhhhhhhHHHHHlhhhllhhhHLLHHHHHHHHHhHHHHHHHHLLLLLLLLEEEEEL qstarts=0,5,17,28,33,57,69,89,103,124,133,141,168,174,187,195,200,212 sstarts=92,98,126,136,140,162,173,190,205,224,235,331,360,369,381,491,505,518 lengths=5,12,10,4,22,11,17,13,19,9,4,27,6,12,4,5,12,6 u=-0.939922,0.318142,-0.123822,0.149099,0.708831,0.689441,0.307109,0.629559,-0.713680 t=13,-20,7 segments=92-96,98-109,126-135,136-139,140-161,162-172,173-189,190-202,205-223,224-232,235-238,331-357,360-365,369-380,381-384,491-495,505-516,518-523 compnd=_BSHC;>"   <A HREF=#alignment-1>1</A>:  4wbd-A 12.1  3.0  198   540   12 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4wbd&u=-0.939922,0.318142,-0.123822,0.149099,0.708831,0.689441,0.307109,0.629559,-0.713680&t=13,-20,7">PDB</A>  MOLECULE: BSHC;                                                      

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4wbdA Z-score=12.1</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct hmqltelsiknqnvfvqhyidgkeemssffdysihhkdmwrerledlssrffareelaay   60
DSSP  lleeeeellllllhhhhhhhhllhhhhhllllllllllhhhhhhhhhhlllllhhhhhhh


DSSP  --------------------------------LLLLL-LLHHHHHHHHHL----------
Query --------------------------------QSNYI-PWRGYFDLIAFV----------   17
ident                                 |             |             
Sbjct ltsyhnkfgssamqsaieklkdpssaavvggqQAGLLtGPLYTIHKIISIivlakqqeke  120
DSSP  hhhhhhhhllhhhhhhhhhlllllleeeeeeeLLLHHhLLHHHHHHHHHHhhhhhhhhhh


DSSP  ------LEEEELLLLLlLLLLlLLEEEEEELLEEEEEELLLLLLllLLLLHHHLLLLlLH
Query ------DEFIIYDDMQyTKRDwRNRNRIKTSQGLQWITVPVQVKgrFHQKIRETLIDgTD   71
ident         |              |        |      |             |  |   
Sbjct lqvpviPIFWVAGEDH-DLDE-INFVHTSEENGPVKKKLPQSYW--KKSSAASTSLD-QE  175
DSSP  hllleeEEEEELLLLL-LHHH-LLEEEEEELLEEEEEELLLLLL--LLLLLLLLLLL-HH


DSSP  HHHHHHHHHHHHHLLlllHHHHHHHHHHHHH-lLLLLLHHHHHHHHHHHHHHhhLLLLEE
Query WAKAHWRALEFNYSAaahFAEIADWLAPIYL-eEQHTNLSLLNRRLLNAICSylGISTRL  130
ident    |                     |                   |             |
Sbjct KCAAWIDDVFAAFEE---TDHTNTLLDNVKRclRESVTFTDFFELLIADLFQ--EEGLVL  230
DSSP  HHHHHHHHHHHLLLL---LLLHHHHHHHHHHhhHLLLLHHHHHHHHHHHHHH--HHLLEE


DSSP  EEH--HHLL---------------------------------------------------
Query ANS--WDYE---------------------------------------------------  137
ident  ||                                                         
Sbjct LNSgdPGIKkletamfqkilrendelaravsdqqafmrqagykpiiesgkeqanlfyeye  290
DSSP  EELllHHHHhhhhhhhhhhhhlhhhhhhhhhhhhhhhhhlllllllllllleeeeeeeel


DSSP  -------------------------------------llllLHHHHHHHHHHLLLLEEEE
Query -------------------------------------ladgKTERLANLCQQAAATEYVS  160
ident                                             |               
Sbjct derfliekdngrfvikeldlgwtrdelhthmeehperfsnnVVTRPLMQEFLIPTLAFIA  350
DSSP  leeeeeeeelleeeehhhleeelhhhhhhhhhhlhhheeelLLLHHHHHHHHLLEEEEEE


DSSP  LHHHHHLL--LHHHHH---LLLLEEEELLLLlLLLL------------------------
Query GPSARSYV--DERVFD---ELSIRVTWFDYDgYRDY------------------------  191
ident ||    |       |         |                                   
Sbjct GPGEINYWgeLKQAFAvmgFKMPPVMPRLNI-TILErhiekklaernislqdaiergten  409
DSSP  LHHHHHHHhlLHHHHHhllLLLLLEEELLLE-EEELhhhhhhhhhllllhhhhhhhllhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  191
ident                                                             
Sbjct qretyferqipeeftavmdqaksqieaihktvrqealkvdqsleplllknaafiqdqlqf  469
DSSP  hhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhh


DSSP  ------------------llllLLLLL---------LLLHHHHHHHHH-HHHHHL-----
Query ------------------kqlwGGFEP---------AVSILDLLFNVG-AEAPDY-----  218
ident                                        |   |   |            
Sbjct lertvmkrieekegyvlkdyerIQNSIkpllapqerIWNIMYYLNRYGpKFFTTFknlpf  529
DSSP  hhhhhhhhhhhhlhhhhhhhhhHHHHHlhhhllhhhHLLHHHHHHHHHhHHHHHHhhlll


DSSP  -----------
Query -----------  218
ident            
Sbjct sfqnqhqvvkl  540
DSSP  llllleeeeel


</PRE>
</PRE>
<HR>
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<H1>PF08889</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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