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<TITLE>Dali: PF08795</TITLE><A name=s001A>
<h1>Results: PF08795</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="RKYISLGGWCGPALMLGKLGLRTEAYPFDFSRVTLDGLMHFIRNGFAEGFYPPGPPPYRPECVGPWVLFRGQHTAFAHFDLNDPHVQAHFQVKMRRFDAVLDSPERPVTFFRTVTARYPQEELALALDLEEAVARRNPSLDFRIVFMVHDQG"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LEEEELLLLLHHHHHHHHHLLLLLLLLLLLEEELHHHHHHHHHHLLLLLLLLLLLLLLLLEEELLEEEEELLLEEELLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLEEEEEEELLLLHHHHHLLHHHHHHHHHHHLLLLLEEEEEEELLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="152   21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2g6tA sequence=xykcliwgvndeytlaydkllfeiskgnlsiealiskdkyakyidgkevidkteisnyefdyiiifnkerysdiknealelgiperkilngkfffisnfdfkrycklieNPITIISDDCWGGLVSSYLGFKFNSPFINFYIhnddYIKFLENXDYYLEQELKVEQEGNVySCTXPKGSlgtgdnkIILNFNHQaSFAEAKNDWDERKTRInkKNLFVKXLIKDdNEKLVKRFDNLPyKNKVCFhpkpxkyksvAFFPRYIWRCINYAARTSNSNLEQYTXDXSWLEKSCDILKXLCGEEDFIREKX dssp=leeeeeelllhhhhhhhhhhhhhhhllleeeeeeellllllllllllleelhhhhhhlllleeeelllllhhhhhhhhhhllllhhheellhhhhlllllhhhhhhhhhLLLEEEELLLHHHHHHHHHLLLLLLLLLLEELlhhhHHHHHHLHHHHHHLLLLLLLLLLHhHLLLLEEEellllllEEEEELLLlLHHHHHHHHHHHHHHLllLLEEEEEELLLlLHHHHHHHHLLLlLLEEEEllllllllllLLLHHHHHHHHHLLLLLLLLLHHHHLLLHHHHHHHLLHHHHHLLLLLLLLLLL qstarts=0,22,33,41,49,57,63,71,79,85,106,114,118,142,148 sstarts=109,130,145,152,159,163,170,185,194,198,212,219,224,237,253 lengths=21,11,7,7,4,6,8,8,4,12,7,4,12,6,4 u=0.346035,0.045734,0.937106,0.660657,-0.721076,-0.208762,0.666178,0.691345,-0.279732 t=-121,58,-1 segments=110-130,131-141,146-152,153-159,160-163,164-169,171-178,186-193,195-198,199-210,213-219,220-223,225-236,238-243,254-257 compnd=_UNCHARACTERIZED_PROTEIN,_HOMOLOG_HI1244_FROM>"   <A HREF=#alignment-1>1</A>:  2g6t-A  7.3  3.3  121   306   11 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2g6t&u=0.346035,0.045734,0.937106,0.660657,-0.721076,-0.208762,0.666178,0.691345,-0.279732&t=-121,58,-1">PDB</A>  MOLECULE: UNCHARACTERIZED PROTEIN, HOMOLOG HI1244 FROM               

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2g6tA Z-score=7.3</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct xykcliwgvndeytlaydkllfeiskgnlsiealiskdkyakyidgkevidkteisnyef   60
DSSP  leeeeeelllhhhhhhhhhhhhhhhllleeeeeeellllllllllllleelhhhhhhlll


DSSP  -------------------------------------------------LEEEELLLLLH
Query -------------------------------------------------RKYISLGGWCG   11
ident                                                           | 
Sbjct dyiiifnkerysdiknealelgiperkilngkfffisnfdfkrycklieNPITIISDDCW  120
DSSP  leeeelllllhhhhhhhhhhllllhhheellhhhhlllllhhhhhhhhhLLLEEEELLLH


DSSP  HHHHHHHHLLlLLLLLLLLEEE----LHHHHHHhHHHLLLLlLLLLllllLLLEEE-LLE
Query PALMLGKLGLrTEAYPFDFSRV----TLDGLMHfIRNGFAEgFYPPgpppYRPECV-GPW   66
ident   |    ||      ||             |                        |    
Sbjct GGLVSSYLGF-KFNSPFINFYIhnddYIKFLEN-XDYYLEQ-ELKV----EQEGNVySCT  173
DSSP  HHHHHHHHLL-LLLLLLLLEELlhhhHHHHHHL-HHHHHHL-LLLL----LLLLLHhHLL


DSSP  EEEEL-------LLEEELLL-LLLLhhHHHHHHHHHHHHhhhhhllllLEEEEEEeLLLL
Query VLFRG-------QHTAFAHF-DLNDphVQAHFQVKMRRFdavldsperPVTFFRTvTARY  118
ident                 | |                  |             |        
Sbjct XPKGSlgtgdnkIILNFNHQaSFAE--AKNDWDERKTRI-------nkKNLFVKX-LIKD  223
DSSP  LLEEEellllllEEEEELLLlLHHH--HHHHHHHHHHHL-------llLLEEEEE-ELLL


DSSP  -HHHHHLLHHHHHhhhhhhllllleEEEEEE----------LLLL---------------
Query -PQEELALALDLEeavarrnpsldfRIVFMV----------HDQG---------------  152
ident            |                                                
Sbjct dNEKLVKRFDNLP-----------yKNKVCFhpkpxkyksvAFFPryiwrcinyaartsn  272
DSSP  lLHHHHHHHHLLL-----------lLLEEEEllllllllllLLLHhhhhhhhhlllllll


DSSP  ----------------------------------
Query ----------------------------------  152
ident                                   
Sbjct snleqytxdxswlekscdilkxlcgeedfirekx  306
DSSP  llhhhhlllhhhhhhhllhhhhhlllllllllll


</PRE>
</PRE>
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<H1>PF08795</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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