Results: PF08014

Query: s001A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
1:  7z5g-B 33.9  0.7  247   331   66 PDB  MOLECULE: UNCHARACTERIZED PROTEIN KIAA0895-LIKE;                     


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=s001A Sbjct=7z5gB Z-score=33.9

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct lvalrptnmdrerdkffqshytynpqfeyqepmptavlekyceasgqfihqavgiieavl   60
DSSP  lhhhllllhhhhhhhhhhllllllllllllllllhhhhhhllllllllhhhhhhhhhhhh


DSSP  ---------------LLLLHHHHHHHHHHHHHHLLLLLLLEEEEELLLLLLEEEEEELLE
Query ---------------SLLSKTRIWSHVRKYMVKEGCLGEIVVHLTEDLLSRASMTVVNGC   45
ident                 || |  ||| ||||| |||| || || | ||||| | | | |  
Sbjct ekfgtyehfeaatggQLLTKCQIWSIVRKYMQKEGCAGEVVVQLSEDLLSQAVMMVENSR  120
DSSP  hhhllhhhhhhhhhlLLLLHHHHHHHHHHHHHHLLLLLLLEEEEELLLLLLEEEEEELLE


DSSP  EEEEEEHHHLLLLLHHHHHHHHLLLHHHHHHHHLLLLLLLHHHHHHLLLLLLLLHHHHHH
Query PTLTINISTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSWIGRKKHELKPNNPTEEGLA  105
ident ||| ||   ||  |||||||||||||| || ||  |||    ||    | | ||||||||
Sbjct PTLAINLTGARQYWLEGMLRHEIGTHYLRGVNNARQPWHNAEGRLRYGLRPANPTEEGLA  180
DSSP  EEEEEELLLLLHHHHHHHHHHHLLLHHHHHHHHHLLLLLLHHHHHHLLLLLLLLHHHHHH


DSSP  HHHHHLLLLLLLLHHHHHHHHHHHHHLLLLHHHHHHHHLLLLLLHHHHHHHHHHHHLLLL
Query SIHSVLFRKDPFLWRAALLYYTVYKASHMSFCELFKDIGKFVKDPNTRWDYCVRAKRGWT  165
ident | ||||||| ||||||||||||   |  |||  || |    | |   || |||||||| |
Sbjct SLHSVLFRKQPFLWRAALLYYTIHRAARMSFRQLFQDLERYVQDADVRWEYCVRAKRGQT  240
DSSP  HHHHLLLLLLLLLHHHHHHHHHHHHHLLLLHHHHHHHHHHLLLLHHHHHHHHHHHLLLLL


DSSP  LLLLLLLLHHHHHHHHHHHHHHHLHHHLLHHHHHHLLLLLHHHHHHHHHHLLLLLLLLLH
Query DTSEPGCFSKDQVYLDGVLQILRFRESIDFHLLTALGKVSYEDVDRLKELAVTENMRVPH  225
ident ||| |||||||||||||   ||| |  ||| ||| |||||||||| |    |  | ||||
Sbjct DTSLPGCFSKDQVYLDGIVRILRHRQTIDFPLLTSLGKVSYEDVDHLRPHGVLDNTRVPH  300
DSSP  LLLLLLLLLHHHHHHHHHHHHHHLLLLLLHHHHHHLLLLLHHHHHHHHHHLLLLLLLLLH


DSSP  HHLLHHHHHHHHHHHHHHLLLL---------
Query FLHDHSRYMEHLERIMEVNELT---------  247
ident |  |  ||   || ||  | |          
Sbjct FMQDLARYRQQLEHIMATNRLDeaelgrllp  331
DSSP  HHLLHHHHHHHHHHHHHHLLLLhhhhhhhll




PF03080

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