Results: PF07906
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2j7q-C 9.6 3.2 145 232 8 PDB MOLECULE: UBIQUITIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=2j7qC Z-score=9.6
back to top
DSSP llllllleeeeeeelllleeeeeeelhhhhhhhhhhhhhhhhhhhhhhllllllLLLLll Query svlqadkkeitiinknenttltqtiapifekylmeilpqrsdtldkqelnlksdRKEKef 60 ident | Sbjct ------------------------------------------------------XKIV-- 4 DSSP ------------------------------------------------------LEEE-- DSSP llLLLLLLLEELleeEEEL-LHHHHHHHHHHHHHHLL-LLLHHHLHHHlhhhhhhHLLHH Query prIKLNGQCYFPgrpQNRI-VCRHIAAQYINDIYQNV-DYKPHQDDYSsaekfltHFNKK 118 ident | | | Sbjct raSRDQSAPVYG---PRAGsQCXSNCFTFLHTCYLXGiDPVLDTTSLD----avlDSGAR 57 DSSP elLLLLLLHHHL---LLLLlLHHHHHHHHHHHHHHHLlHHHLLHHHHH----hhhHHHHH DSSP HH--------------lhhHHHHH-------------hlLLLLEEEEHH----------H Query CK--------------nqtLALVS-------------srPEGRCVAACG----------D 141 ident Sbjct LDaiadekvkrqaltdhpyRLGTEiptvietpagitghaLSRPFNGTAEtqdlggykclG 117 DSSP HHhhhhhhhhhhlllllllLLHHHllleeeelleeeeeeELLLEEELLLleeelleeelL DSSP HHHHHHHHHHHhhhllLLEEEEEEEELLEEEEEEEEEeellllleeEEEEEELHHH---- Query FGLVMKAYFDKmesngISVMAAILLVDNHALTVRLRIknttegcthYVVSVYDPNV---- 197 ident | | | | | || Sbjct ILDFLTYARGK-----PLPVYIIVTVGVFTRGVIVAR---------GATYVFDPHTtdls 163 DSSP HHHHHHHHHLL-----LLLEEEEEEELLEEEEEEELL---------LLEEEEELLLllll DSSP -LLLLEEEEEllhhhhlllllHHHLlllllllhHHHHHlLLLEEEEEELLLH-------- Query -TNDKIRIMSeskenikhyslMDFMnvdysllkWSNDHvINQSVAIIPALPK-------- 248 ident Sbjct aEAAVYVCDD-------fteaISAL-------sFFTEXiGDFYYDAVLVYFTrcrttlis 209 DSSP lLLEEEEELL-------hhhhHHHH-------lLLLLLhHHLLEEEEEEEEEelllllll DSSP ----------hhhHHHLlllllllllllhhhhhhhhhhllhhhhhhhhhhhhlllhhhhh Query ----------eqlLMLKgsvdeitpplspatmnllmaigqnhqltqlmiqlqkmpelhrt 298 ident Sbjct psellvqixdqykDPDI------------------------------------------- 226 DSSP hhhhhhhhhhhhlLLLL------------------------------------------- DSSP hhhhlll Query emltayn 305 ident Sbjct -dasvxs 232 DSSP -llhhhl
