Results: PF07759
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6cf9-A 12.3 3.3 136 516 18 PDB MOLECULE: LYTIC TRANSGLYCOSYLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6cf9A Z-score=12.3
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct mqysieklkkeenslakdyyiyrlleknkiskkdaqdlnshifryigkikselekiiplk 60 DSSP llllhhhhhlllllhhhhhhhhhhhhllllllllllllhhhllllllhhhhhhhhhllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct pyinpkyakcytytantildanltcqsvrlnslvfiaslnskdrttlaqtfknqrpdltn 120 DSSP llllhhhlhhhhlllllhhhllhhhhhhhlllhhhhhhllhhhhhhhhhhhllllhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct lllafntsdpmsyivqkedingffklynyskkydldlntslvnklpnhigfkdfaqniii 180 DSSP hhhhlllllhhhhhhhlllhhhhhhhhhhlllllllllhhhhhhhhhlllhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct kkenpkfrhsmleinpenvsedsafylgvnaltydktelaydffkkaaqsfksqsnkdna 240 DSSP hlllhhhhhhhhhllhhhllhhhhhhhhhhhhhlllhhhhhhhhhhhhhhlllhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct ifwmwliknneedlktlsqssslniyslyakeltntpfpkieslnpskkknnfnmqdpfa 300 DSSP hhhhhhhhllhhhhhhhhllllllhhhhhhhhhllllllllllllllllllllllllhhh DSSP ----------------------------LLLL---------------hhhHHHHHHhhhh Query ----------------------------SVKD---------------rdaWAKDLAttfe 17 ident Sbjct wqkinkqirdanasqldvlakefdtqetLPIYayilerknnfkkhyfimpYYDNIK---- 356 DSSP hhhhhhhhhlllhhhhhhhhhhllllllHHHHhhhhhhhlllllllllllLHHHLL---- DSSP hllllLLHHHHHHHHHHHHHHHLLLLLLllllhhhhhhhhhhhhhhhllllhhhhhhhll Query sqglaPTLENVCSVLAVAQQESNYQADPavpglskiawqeidrraermhipaflvhtalk 77 ident || | ||| Sbjct ----dYNKTRQALILAIARQESRFIPTA-------------------------------- 380 DSSP ----lLLHHHHHHHHHHHHHHHLLLLLL-------------------------------- DSSP llllllllhhhhhhhlllhhhhhhhhhhhhlllllhhhhhhhhlLLLEELLLLEEHHHHH Query ikspngksyserldsvrtekqlsaifddlinmvpmgqtlfgslnPVRTGGPMQVSIAFAE 137 ident | || | Sbjct ------------------------------------------isVSYALGMMQFMPFLAN 398 DSSP ------------------------------------------llLLLLLLLLLLLHHHHH DSSP HL-LLLLllLLLLLhHHHHLLHHHHHHHHHHHHHLL-LLLLlLHHHHHHHHHHLLLHHHH Query QH-TKGYpwKMDGTvRQEVFSRRGGLWFGTYHLLNY-PASYsAPIYRFADFNAGWYASRN 195 ident | | || ||| | | | Sbjct HIgEKEL-kIPNFD-QDFMFKPEIAYYFGNYHLNYLeSRLK-SPLFVAYAYNGGIGFTNR 455 DSSP HHhHLLL-lLLLLL-HHHHHLHHHHHHHHHHHHHHHhHHHL-LHHHHHHHHHHLHHHHHH DSSP HHHHHHhhhhhlllllllllllllllllllhhhhhhhllhhhhlllhhhhhhhhlllllh Query AAFQNAvskasgvklaldgdlirydskepgktelatrklaaklgmsdseirrqlekgdsf 255 ident | Sbjct MLARND------------------------------------------------------ 461 DSSP HHHLLL------------------------------------------------------ DSSP hhhhlhhhhhhhhhhhhhHLLL-llllllLLLLllllllllllLHHHHHHHHHHHHHHHH Query sfeetalykkvyqlaetkTGKS-lpremlPGIQlespkitrnlTTAWFAKRVDERRARCM 314 ident | | | Sbjct --------------mfktGKFEpflsmelVPYQ----------ESRIYGKKVLANYIVYR 497 DSSP --------------llllLLLLlhhhhhlLLLH----------HHHHHHHHHHHHHHHHH DSSP HL----------------- Query KQ----------------- 316 ident Sbjct HLlndsikisdifenliqn 516 DSSP HHllllllhhhhhhhllll
