Content-type: text/html

<TITLE>Dali: PF06356</TITLE><A name=s001A>
<h1>Results: PF06356</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

<form NAME="optionform" METHOD="POST" TARGET="_blank"/>
<input TYPE="hidden" NAME="title" VALUE="PF06356">
<input TYPE="hidden" NAME="jobid" VALUE=PF06356>
<input TYPE="hidden" NAME="query_sequence" VALUE="MSKYNAKKVEYKGIVFDSKVECEYYQYLESNMNGTNYDRIELQPKFELQPKFGKQRPITYIADFSLWKEGKLVEVIDVKGKATEVANIKAKIFRYQYRDVNLTWICKAPKYTG"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLEEELLEEELLHHHHHHHHHHHHHLLLLLLLEEEELLEEEEELLLLLLLLEEEELLEEEEELLEEEEEEEELLLLLHHHHHHHHHHHHHLLLLEEEEELLLLHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="113    1     2     3     4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=1t0fB sequence=sfsevqiarrikegrgqghgkdyipwltvqevPSSGRSHRIYshktgrVHHLLSDLELAVFLSLEWESSVLDIREQFPLlpsDTRQiaidsgikhpviRGVDQVMSTDFLVDCKDgpFEQFAIQVKPaaALQDeRTLEKLELERRYWQqkQIPWFIFTDKEINPVVKENIEWLYSVKTEEVSAELLAQLSPLAHILQEKGDENIINVCKQVDIAYDLELGKTLSEIRALTANGFIKFNIYKSFRANKCADLCISQVVNMEEL dssp=lllhhhhhhhhhlllllllhhhllllllhhhlLLLLLLEEEEllllllEEEELLHHHHHHHHHHHHLLLEEEEEEEEELlhhHHHHhhhhhllllleeLLEELLLEEEEEEEELLllLLEEEEEELLhhHHHLhHHHHHHHHHHHHHHhlLLLEEEELHHHLLHHHHHHHHHHLLLLLLLLLHHHHLLHHHHHHHHHHLLLLLHHHHHHHHHHHLLLLLLHHHHHHHHHHHLLLEELLLLLLHHHLLHHHLEELEEELHHHL qstarts=2,12,30,36,46,53,70,80,84,98 sstarts=32,48,65,69,82,98,117,129,134,150 lengths=10,17,4,10,4,17,10,4,14,10 u=0.716263,0.144445,-0.682717,0.605439,-0.615122,0.505043,-0.347004,-0.775087,-0.528042 t=-7,-39,86 segments=39-48,55-71,72-75,76-85,89-92,105-121,124-133,136-139,141-154,157-166 compnd=_TRANSPOSON_TN7_TRANSPOSITION_PROTEIN_TNSA;>"   <A HREF=#alignment-1>1</A>:  1t0f-B  8.3  3.2  100   262   13 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=1t0f&u=0.716263,0.144445,-0.682717,0.605439,-0.615122,0.505043,-0.347004,-0.775087,-0.528042&t=-7,-39,86">PDB</A>  MOLECULE: TRANSPOSON TN7 TRANSPOSITION PROTEIN TNSA;                 

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=1t0fB Z-score=8.3</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------llLLLLLLEEEL------LEEELLHHHHHH
Query ------------------------------msKYNAKKVEYK------GIVFDSKVECEY   24
ident                                                      |  |   
Sbjct sfsevqiarrikegrgqghgkdyipwltvqevPSSGRSHRIYshktgrVHHLLSDLELAV   60
DSSP  lllhhhhhhhhhlllllllhhhllllllhhhlLLLLLLEEEEllllllEEEELLHHHHHH


DSSP  HHHHHhHLLLllLLEEEELLEE---EEEL---------lllLLLLEEEELLEEEEELL--
Query YQYLEsNMNGtnYDRIELQPKF---ELQP---------kfgKQRPITYIADFSLWKEG--   70
ident    ||          |  |                               ||        
Sbjct FLSLE-WESS--VLDIREQFPLlpsDTRQiaidsgikhpviRGVDQVMSTDFLVDCKDgp  117
DSSP  HHHHH-HLLL--EEEEEEEEELlhhHHHHhhhhhllllleeLLEELLLEEEEEEEELLll


DSSP  EEEEEEEELL--LLLH-HHHHHHHHHHHHLL--LLEEEEELLL-----------------
Query KLVEVIDVKG--KATE-VANIKAKIFRYQYR--DVNLTWICKA-----------------  108
ident      | ||            |    |                                 
Sbjct FEQFAIQVKPaaALQDeRTLEKLELERRYWQqkQIPWFIFTDKeinpvvkeniewlysvk  177
DSSP  LLEEEEEELLhhHHHLhHHHHHHHHHHHHHHhlLLLEEEELHHhllhhhhhhhhhhllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  108
ident                                                             
Sbjct teevsaellaqlsplahilqekgdeniinvckqvdiaydlelgktlseiraltangfikf  237
DSSP  lllllhhhhllhhhhhhhhhhlllllhhhhhhhhhhhllllllhhhhhhhhhhhllleel


DSSP  --------------------lhhhl
Query --------------------pkytg  113
ident                          
Sbjct niyksfrankcadlcisqvvnmeel  262
DSSP  lllllhhhllhhhleeleeelhhhl


</PRE>
</PRE>
<HR>
<script>

function openViewer() {
    document.optionform.action = "/cgi-bin/daliviewer/viewer.cgi";
    document.optionform.target = "_blank";
    document.optionform.submit();
    return true;
}

function poppush() {
        document.optionform.action = "/cgi-bin/daliviewer/test_poppush.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

function mview() {
	document.optionform.action = "/cgi-bin/daliviewer/strali.cgi";
	document.optionform.target = "_blank";
	document.optionform.submit();
}

function sans() {
        document.optionform.action = "/cgi-bin/daliviewer/call_sans.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

function sanspanz() {
        document.optionform.action = "/cgi-bin/daliviewer/call_sanspanz.cgi";
        document.optionform.target = "_blank";
        document.optionform.submit();
}

</script>


<H1>PF06356</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
<PRE>
</PRE>
<PRE><IMG SRC=1.png>
<PRE>
<PRE>
</PRE>
<PRE><IMG SRC=2.png>
<PRE>