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<TITLE>Dali: PF06081</TITLE><A name=s001A>
<h1>Results: PF06081</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="jobid" VALUE=PF06081>
<input TYPE="hidden" NAME="query_sequence" VALUE="HLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMV"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="142    8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=7vq3B sequence=mekvreivregirvgneDPRRiIHAFKVGLALVLVSSFYYYQpfgpftdyfGINAMWAVMTVVVVFEFSVGATLGKGLNRGVATLVAGGLGIGAHQLARlsgatvepiLLVMLVFVQAALSTFvrffpwVKTKFDYGILIFILTFALISLSgfrDEEIMDLAESRLSTVVIGGVSCILISIFVCPVWAGQDLHSLLASNFDTLSHFLQDFGDEYFEDYKVVEKRKKNLERYKSVLDSKSDEEALANYAEWEPPHGQFRFRHPWKQYVAVGALLRQCAYRIDALNSYINSDFQIPVDIKKKLETPLRRMSSESGNSMKEMSISLKQMIKSSSSDIHVSNSQAACKSLSTLLKSGILNDVEPLQMISLMTTVSMLIDIVNLTEKISESVHELASAARFKNKM dssp=lhhhhhhhhhhhhhhhhLLHHhHHHHHHHHHHHHHHHHHHLLlllllllllLLHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhllllhhhHHHHHHHHHHHHHHHhlllhhHHHHLHHHHHHHHHHHHHHHHLlllLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL qstarts=0,4,24,73,90,113 sstarts=17,22,51,108,129,154 lengths=4,20,48,15,22,29 u=-0.900127,0.023976,0.434968,0.105001,0.980987,0.163218,-0.422784,0.192589,-0.885530 t=43,-116,86 segments=18-21,23-42,52-99,109-123,130-151,155-183 compnd=_ALUMINUM-ACTIVATED_MALATE_TRANSPORTER_1;>"   <A HREF=#alignment-1>1</A>:  7vq3-B 13.3  3.7  138   400   25 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=7vq3&u=-0.900127,0.023976,0.434968,0.105001,0.980987,0.163218,-0.422784,0.192589,-0.885530&t=43,-116,86">PDB</A>  MOLECULE: ALUMINUM-ACTIVATED MALATE TRANSPORTER 1;                   

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=7vq3B Z-score=13.3</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  -----------------LLLL-HHHHHHHHHHHHHHHHHHLL---------LLLHHHHHH
Query -----------------HLIG-ARTIKTGIAIFLTAVFCMAL---------DLTPIYAIL   33
ident                           | | |  |   |                   |  
Sbjct mekvreivregirvgneDPRRiIHAFKVGLALVLVSSFYYYQpfgpftdyfGINAMWAVM   60
DSSP  lhhhhhhhhhhhhhhhhLLHHhHHHHHHHHHHHHHHHHHHLLlllllllllLLHHHHHHH


DSSP  HHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL--------lLLHHHHHHHHHH
Query TAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFG--------dQSPFTYALSATF   85
ident | ||  |    | | ||  |  ||    |       |                    |  
Sbjct TVVVVFEFSVGATLGKGLNRGVATLVAGGLGIGAHQLARlsgatvepiLLVMLVFVQAAL  120
DSSP  HHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhllllhhhHHHHHHHHHHHH


DSSP  HHH----hhHHLLLHHHHHHHHHHHHHHHHH--lLLLHHHHHHHHHHHHHHHHHHHHHHH
Query TIL----fcTKLKLQVGTNVAVLTSLAMIPG--iHDAYIFNFLSRTLTAIIGLVTSGLIN  139
ident           | |   |     ||                   ||  |  || |   || 
Sbjct STFvrffpwVKTKFDYGILIFILTFALISLSgfrDEEIMDLAESRLSTVVIGGVSCILIS  180
DSSP  HHHhlllhhHHHHLHHHHHHHHHHHHHHHHLlllLLLLHHHHHHHHHHHHHHHHHHHHHH


DSSP  HHL---------------------------------------------------------
Query FMV---------------------------------------------------------  142
ident   |                                                         
Sbjct IFVcpvwagqdlhsllasnfdtlshflqdfgdeyfedykvvekrkknleryksvldsksd  240
DSSP  HHLllllhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhhlllhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  142
ident                                                             
Sbjct eealanyaewepphgqfrfrhpwkqyvavgallrqcayridalnsyinsdfqipvdikkk  300
DSSP  hhhhhhhhllllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhllllllhhhhhl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  142
ident                                                             
Sbjct letplrrmssesgnsmkemsislkqmikssssdihvsnsqaackslstllksgilndvep  360
DSSP  lhhhhhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhhhhhlllllllllh


DSSP  ----------------------------------------
Query ----------------------------------------  142
ident                                         
Sbjct lqmislmttvsmlidivnltekisesvhelasaarfknkm  400
DSSP  hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllllll


</PRE>
</PRE>
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<H1>PF06081</H1>
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