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<TITLE>Dali: PF05912</TITLE><A name=s001A>
<h1>Results: PF05912</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_dssp" VALUE="LEEEELLLLLLLLLEEEEEEELLLLLLLLLEEEEELLLEELLLLEEELLLLLLLLLLLLLLEEEEEEEEEELLLLLLLLEEEEEEEEEEELLLLLLLLLLLEELLL"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=3uafA sequence=ktsclmaTGVLKCPTDPEavkkVHIDLWDAaaAAAESDDLMGRTWSDRNGNFQVTGCASDFGPINTPDPYLYIQHNCPhrDSNATNPIQIDVIPLflPSIVRLGnVYLDRYLEDYHH dssp=lleeeeeEEEEELLLLHHhhllLEEEEEEHhhHHLLLLLEEEEEELLLLLEEEEEEEELLLLLLLLLLEEEEEELLLLllLLLLLLLEEEELLLLllLLEEEEEeEELLLLHHHHHL qstarts=0,15,23,37,44,54,74,94,101 sstarts=7,22,32,45,49,58,80,97,105 lengths=11,8,13,4,9,20,15,7,5 u=0.164297,0.515505,0.840988,0.728996,-0.637803,0.248540,0.664508,0.572243,-0.480591 t=-23,-15,-7 segments=28-38,43-50,53-65,66-69,70-78,79-98,101-115,118-124,126-130 compnd=_TTR-52;>"   <A HREF=#alignment-1>1</A>:  3uaf-A  9.5  2.5   92   117   17 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=3uaf&u=0.164297,0.515505,0.840988,0.728996,-0.637803,0.248540,0.664508,0.572243,-0.480591&t=-23,-15,-7">PDB</A>  MOLECULE: TTR-52;                                                    

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=3uafA Z-score=9.5</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  -------LEEEELLLLLLllleEEEEEELL--LLLLLLLEEEEELlLEELlllEEELLLL
Query -------SGTITCNATMKdsfvEKLQVWEH--DKATPNDMIGEVAqFIKDksgFFYKVDA   51
ident         |   |              |      |   |  |               |  
Sbjct ktsclmaTGVLKCPTDPEavkkVHIDLWDAaaAAAESDDLMGRTW-SDRN---GNFQVTG   56
DSSP  lleeeeeEEEEELLLLHHhhllLEEEEEEHhhHHLLLLLEEEEEE-LLLL---LEEEEEE


DSSP  LLlLLLLLLLEEEEEEEEEELLL--LLLLLEEEEEEEEEEellllLLLLLLL-EELLL--
Query EDnGDGLFDNDYEIYFTIYHNCT--EKRTGDDVTVYVKDFlvidgAYNHTMD-INLSD--  106
ident     |    |    |  | |||              |                  |    
Sbjct CA-SDFGPINTPDPYLYIQHNCPhrDSNATNPIQIDVIPL---flPSIVRLGnVYLDRyl  112
DSSP  EE-LLLLLLLLLLEEEEEELLLLllLLLLLLLEEEELLLL---llLLEEEEEeEELLLlh


DSSP  -----
Query -----  106
ident      
Sbjct edyhh  117
DSSP  hhhhl


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<H1>PF05912</H1>
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