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<TITLE>Dali: PF05458</TITLE><A name=s001A>
<h1>Results: PF05458</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="MPKRSYPFSESFSSQYKVHVGQKEMSTCGVFGLRYRQEIYEKTKSLLFNGTKAVMGRIWKAEGEEKQSDVVESDQTSVSAAHQTLLRGQTTIGLDGRLHRARSTPGVGVCPPACGVCQRGSALRKCCSQCERQVCSSCVQQCNSCSEICCSVCTVTDYSERYERVLCCGCSS"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2cjsC sequence=APTCGICHkTKFADGCGHNCSYCQTKFCARCGGRVSLrsNKVMWVCNLCRKQQE dssp=LLLLLLLLlLEELLLLLEELLLLLLEELLLLEEEEEEllLEEEEEEHHHHHHHL qstarts=123,131,160 sstarts=0,9,39 lengths=8,28,12 u=0.602469,-0.600791,0.525435,-0.722672,-0.690056,0.039602,0.338787,-0.403576,-0.849912 t=1,9,25 segments=89-96,98-125,128-139 compnd=_UNC-13_HOMOLOG_A;>"   <A HREF=#alignment-1>1</A>:  2cjs-C  6.1  1.9   48    54   19 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2cjs&u=0.602469,-0.600791,0.525435,-0.722672,-0.690056,0.039602,0.338787,-0.403576,-0.849912&t=1,9,25">PDB</A>  MOLECULE: UNC-13 HOMOLOG A;                                          

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2cjsC Z-score=6.1</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllllllllllllllllllhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Query mpkrsypfsesfssqykvhvgqkemstcgvfglryrqeiyektksllfngtkavmgriwk   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  hlllllllllllllllllllllllllllleeellllleeellllllllllllllllllll
Query aegeekqsdvvesdqtsvsaahqtllrgqttigldgrlhrarstpgvgvcppacgvcqrg  120
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  lllEEELLLLL-LEEELLLEEELLLLLLEEELLLEEEELL-lLLLEEEELLLLL---
Query salRKCCSQCE-RQVCSSCVQQCNSCSEICCSVCTVTDYS-eRYERVLCCGCSS---  172
ident       |  |        |   |  |    |  |              |  |     
Sbjct ---APTCGICHkTKFADGCGHNCSYCQTKFCARCGGRVSLrsNKVMWVCNLCRKqqe   54
DSSP  ---LLLLLLLLlLEELLLLLEELLLLLLEELLLLEEEEEEllLEEEEEEHHHHHhhl


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<H1>PF05458</H1>
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