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<TITLE>Dali: PF05444</TITLE><A name=s001A>
<h1>Results: PF05444</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="CIYCRDINCQRSSYDADEQCSEKLDACVSVFKAGVIQAQGCLESLEDDWREKCEDKDKGNEIDCEICVTERCNNVAAKRTSCIQCNNTEDAQCAESPGLLTAVQCPIARSGRSFCYASLVGDDLKRGCSLTLSDQVKCLADPNCHLCD"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6ionA sequence=leCYSCVQkadDGCSPNKMKTVKCAPGVDVCTEAVGAvetihgqfslAVRGCGSglpgknDRGLdlhgllAFIQLQQCAQDRCNAKLNPPNGvECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLTAANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTY dssp=leEEEEEEellLLLLHHHLEEEELLLLLLLEEEEEEEeeelleeeeeEEEEELLllleeeEEEEeelleeEEEEEEEELLLLLLLLLLLLLLlEEELLLLLLLLLLLLLLLLEEELLLHHHLLLLEEEEEEEEEEELLEEEEEEEEEEELLLLLLLEEEEELLEEEEEEEELLLLHHHLLLLLLL qstarts=0,6,11,36,55,59,120,142 sstarts=2,11,15,47,60,70,88,93 lengths=6,4,22,7,4,18,4,6 u=0.314221,-0.948485,-0.040511,0.717812,0.209442,0.663988,-0.621298,-0.237718,0.746645 t=-20,-34,-52 segments=3-8,12-15,16-37,48-54,61-64,71-88,104-107,109-114 compnd=_ANTI-C4.4A_ANTIBODY_11H10,_LIGHT_CHAIN;>"   <A HREF=#alignment-1>1</A>:  6ion-A  5.4  8.5   71   185   23 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6ion&u=0.314221,-0.948485,-0.040511,0.717812,0.209442,0.663988,-0.621298,-0.237718,0.746645&t=-20,-34,-52">PDB</A>  MOLECULE: ANTI-C4.4A ANTIBODY 11H10, LIGHT CHAIN;                    

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6ionA Z-score=5.4</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  --LLLEEH---HHHHlLLLLLLLLLLLLLLLEEEEEEL-------leeEEEEELLlllhh
Query --CIYCRD---INCQrSSYDADEQCSEKLDACVSVFKA-------gviQAQGCLEsledd   48
ident   |  |       |          |    | |     |             ||       
Sbjct leCYSCVQkadDGCS-PNKMKTVKCAPGVDVCTEAVGAvetihgqfslAVRGCGS-----   54
DSSP  leEEEEEEellLLLL-HHHLEEEELLLLLLLEEEEEEEeeelleeeeeEEEEELL-----


DSSP  hhhhhhlLLLL------LLEEEEEELLLLLLLLLLhhheelleelllllhhhhlhhhlll
Query wrekcedKDKG------NEIDCEICVTERCNNVAAkrtsciqcnntedaqcaespgllta  102
ident                    |    |   |||                             
Sbjct -glpgknDRGLdlhgllAFIQLQQCAQDRCNAKLN-------------------------   88
DSSP  -llleeeEEEEeelleeEEEEEEEELLLLLLLLLL-------------------------


DSSP  eellllllllleeeeeeeLLEEeeeeellhhhhhhhhlllLEEEEL--------------
Query vqcpiarsgrsfcyaslvGDDLkrgcsltlsdqvkcladpNCHLCD--------------  148
ident                                          |  |               
Sbjct ------------------PPNG-----------------vECYSCVglsreacqgtsppv  113
DSSP  ------------------LLLL-----------------lEEELLLllllllllllllle


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  148
ident                                                             
Sbjct vscynasdhvykgcfdgnvtltaanvtvslpvrgcvqdefctrdgvtgpgftlsgsccqg  173
DSSP  eelllhhhlllleeeeeeeeeeelleeeeeeeeeeellllllleeeeelleeeeeeeell


DSSP  ------------
Query ------------  148
ident             
Sbjct srcnsdlrnkty  185
DSSP  llhhhlllllll


</PRE>
</PRE>
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<H1>PF05444</H1>
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<H1>Dali logos </H1>
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