Results: PF05212
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6h2n-B 12.7 3.6 204 313 7 PDB MOLECULE: PROBABLE SS-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6h2nB Z-score=12.7
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DSSP lllllllllllhhhlllllllllllllllhhhlllLLLLEEEEEEELHH---HHHHHHHH Query asnprgaeslppgivvsesdfylrrlwgepsedlkKKPKYLVTFTVGYE---QRHNINAT 57 ident | | | Sbjct -----------------------------------SMKKVSVIMPTFNNgekLHRTISSV 25 DSSP -----------------------------------LLLLEEEEEEELLLhhhHHHHHHHH DSSP HLL--lLLLEEEEEEELLL-----LLHHHHHLhhHHHLEEEEL--LLLLHHHHHHHHLlh Query VKK--fSDDFAILLFHYDG-----RTSEWDQFewSRNAIHVSA--RKQTKWWYAKRFLhp 108 ident | | | Sbjct LNQtmkSTDYELIIIDDHSndngeTLNVIKKY--KGLVRFKQLkkNSGNASVPRNTGL-- 81 DSSP HLLlllHHHEEEEEEELLLllllhHHHHHHLL--LLLLEEEELllLLLLLHHHHHHHH-- DSSP HHHLlLLEEEEELLLEELLLLLHHHHHHHHHHLLLLEEEEEELHHHlLLLLLlllLLLLL Query DIVSaYEYIFIWDEDLGVEHFNADKYIHLVKKYGLEISQPGLEPNNgLTWEMtkrRGDKE 168 ident || | | | | Sbjct KMSK-AEYVFFLDSDDLLHERALEDLYNYGKENNSDLIIGKYGVEG-VPKAI---FEKGN 136 DSSP HHLL-LLEEEELLLLLEELLLHHHHHHHHHHHHLLLEEEELEEEEL-LLLHH---HLLLL DSSP LL-LLLLLlllllllllLLLLllLLLLlLLEEEHHHHH-HHHHhLLLLLL--LLLLHHHH Query VH-MVTEEkpgwcsdphLPPCaaFVEImAPVFSREAWR-CVWHmIQNDLV--HGWGLDFA 224 ident | | Sbjct VAkADIID--------nSIFY--ALSV-LKMFKKSVIDkNKIK-FKTFSKtaEDQLFTIE 184 DSSP LLlLLLLL--------lLHHH--LLLL-LLEEEHHHHHhLLLL-LLLLLLllHHHHHHHH DSSP HHHHLLlhhhHEEEEEEE-EEEELLLllhhhhllllllllhhhhhhhhhHHHHHHHHHHH Query LRRCVEpaheKIGVIDSQ-WIVHQVIpslgnqgesdkgkmpwdsvrarcKSEWAQFQLRV 283 ident Sbjct FLMNSK----NYSIKTDYeYYIVVND---------------------stGNQYFATINEI 219 DSSP HHLLLL----LEEEELLLlLEEEELL---------------------llLHHHHHHHHHH DSSP H-------------------------------------------------------HHHH Query T-------------------------------------------------------NADK 288 ident Sbjct YkaiykspiyknqekrhqlagkyttrllrhgqkknfanskmkyedkiewlnnfsktINKV 279 DSSP HhhhhlllllllhhhhhhhhhhhhhhhhhhlllllhhhllllhhhhhhhhhhhhhhHLLL DSSP L--------------------------------- Query S--------------------------------- 289 ident Sbjct Prdsdkyvtqifnlkleairqndllavmiadkll 313 DSSP Lhhhhhhllhhhhhhhhhhhlllhhhhhhhhhhl
