Results: PF05124
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6nps-A 6.5 3.7 82 968 16 PDB MOLECULE: AXYAGU115A;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6npsA Z-score=6.5
back to top
DSSP leelleellllllllllllllllllllllleeeeeelllleeeeellhhhlllleeelle Query trigkgyrftfrvystikieegedypldkefkvkeistdkikleyknidslgneiylfny 60 ident Sbjct -------------------qgmdftlnqemlmtdtksgalfyqeeealsgvrkiankvmh 41 DSSP -------------------lllleeeehhhhllllllleeeellllllhhhhhhhhhhhh DSSP eeeEEEELllleeeeeeelllllllllleeeeelleeeeeelleeeeeelleeellllll Query tiiPEKCYkdyvlfkvikrkektvdvkdvayigdgiyavkvnntvhvfykgkelknheki 120 ident | Sbjct dveLVFGY---------------------------------------------------- 49 DSSP hhhHHHLL---------------------------------------------------- DSSP llllllllLLLLlLLLLLEEEELLlLLLHHHHHHHHLLLLLLLLLLLllLLLLEEEEEEE Query ylgsvdvySSNPlNVNKDIILIGGpKVNKIVKELEDKGLLKVNISTNypGNNRGIILKIK 180 ident | | || | Sbjct ----qpeaTKDRdMLSRHAVLYGTvGHSPLLDELNAAALIDLTEIAG--KREVFLFQVVD 103 DSSP ----llleELLHhHEEEEEEEEEElLLLHHHHHHHHLLLLLHHHLLL--LLLLEEEEEEE DSSP L-LLLLLEEEEEEELLHHHHHHHHHHHHHL------------------------------ Query N-PYNDNNIYILAGSDRWGTKAAILVFLTK------------------------------ 209 ident |||| || | Sbjct QpIQGVEKALVIAGSDKRGTIYGLFHLSEKlgvsplvdwsgvlparkesfslkgdykyvs 163 DSSP EeELLEEEEEEEEELLHHHHHHHHHHHHHHlllllllllllllllllleeeelllleeel DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct kepsvkyrgffindewpafgnwsaknfggfnaemydhvfelllrlkgnylwpamwsarfn 223 DSSP lllllleeeeellllllhhhhhhhhhhllllhhhhhhhhhhhhhlllleeelllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct ddgpglanveladeygvimgashhepclrygeeykylrgpdsiygdawnfitnregitkf 283 DSSP llllllhhhhhhhhhlleelllllllllllllhhhhhllllllllllllllllhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct wedglkrtghfeniitigmrgeadtkimgedatledninllrdviqtqnklikehvnpnl 343 DSSP hhhhhhhhlllllleeellllllllllllllllhhhhhhhhhhhhhhhhhhhhhhllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct kevprmlalykevepffygdentpglinseeledvilmlcddnhgnlrtlptedmrkhsg 403 DSSP hhlleeeellllhhhhhhlllllllllllhhhllleeeeellllllllllllllhhhlll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct gygmyyhfdyhggpvsyewinssylpkiweqmtmaydfgvrdlwivnvgdiatqelplsf 463 DSSP leeeeeelllllllllllllllllhhhhhhhhhhhhhllllleeeeelllllllhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct fldlaydfdkwgtnainktddytkqwieqqfagvfnleqkdkvfellngytkiahnrrpe 523 DSSP hhhhhhlhhhhlllllllhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhllhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct amnvdvyhpvnyhetdqlldridhllglaeelyqevdqqhftayfalvyyptvgnlnlqk 583 DSSP hlllllllllhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhlhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct mwllngknkyaaqlnlieanklaeqvkaclkrdqeivdeyhtiadgkfygmglsehigfv 643 DSSP hhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllllllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct hwnedenknpvlsyvlpvnkprllvsidgtelrsegspwhvntlplvdflepdvnqasft 703 DSSP llllllllllleeelllllllleeeeellllleelllllllleeellhhhlllllleeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct issvsekkaeyhistdqdwlscsaangvldgknklsetihvfvdrdgladqaegritvkt 763 DSSP eeellllleeeeeeelllleeellleeeelllllleeeeeeeellllllleeeeeeeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct pvgkvtivvpvvnndftnypdmtfvdtkgyisieaehfatqkatenldgtlnrfevldgy 823 DSSP lleeeeeeeeeelllllllllleeellllleeeellllleeeleellllleeeeeeeell DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct gktlsaikafptdthyqvgkdapfveyhfvtqeagvyelefylqpsnpvtregtmyagiq 883 DSSP lllleeeeeellllllllllllleeeeeeeellleeeeeeeeelllllllllllleeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 209 ident Sbjct vnendvdvinvlpdgyhvdgphwgidvinnirttktkitceqglnklriyavspgfalek 943 DSSP ellllleeeellllllllllhhhhhhhhhlleeeeeeeeelleeeeeeeeellllleeee DSSP ------------------------l Query ------------------------y 210 ident Sbjct iviypdgkklansylgpnetyyvgr 968 DSSP eeeeellllllllllllllllllll
