Results: PF05123
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3u2g-A 3.2 3.7 97 274 12 PDB MOLECULE: S-LAYER PROTEIN MA0829;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=3u2gA Z-score=3.2
back to top
DSSP llllllllllllllllllllllllllllllllhhhhhhhheelleellllllllllllhh Query kkigaiavggamvatalasgvaaevttsgfsdykelkdilvkdgqpncyvvvgadapstm 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhhhhhhllllllllllllllllLLLLLLLLLLLllllllllllllllEEEEE Query dvvsaadiaakigslcykegtvedgsaditVHAEANSDDFDlkkdwnnsampanaYALFV 120 ident Sbjct ------------------------------TYEIRGQVASG--------------FGDQS 16 DSSP ------------------------------LEEEELLLEEL--------------LLLEE DSSP EELLhhhhhlllllllllllllllllllhhhlleeeeeeELLLLLEELLlllllllllLL Query AASDgdysekfendtgkpsfmdngvlgdadkinktvdlgDIATMMKVDDvdpsdwydsDD 180 ident | | | Sbjct WDAS-----------------------------------SFAGFYYDID---------DN 32 DSSP ELLL-----------------------------------LLLLLLLLLL---------LL DSSP EEEEEEEEEEEELhhhlEEEEEEEEEEEEEeellllllhhhllllllLLEEEELLEEEEE Query DAGEIVMVELKNDtsdgFTVYKKNMLYETLvykddeenfanttkmeeGMRIPFLGKEMVV 240 ident | | | | | | Sbjct VSTETLTVSDLDG----NVIPEGGLVYTTTiadvdfeyynpdagwdqYPVXGFFAEEYIP 88 DSSP LLLEEEEELLLLL----LEELLLLEEEEEEleeeeeeeeehhhleeeEEEEEELLEEEEE DSSP EEEelllleEEEELLLLLLLLLL------lLEEEEellEEEE------------------ Query VDIdkdddaIYLGTPVYDGIIKE------gETYDLgngYQVK------------------ 276 ident | | | Sbjct INP---dkaDKIAKLVLDSDDKYtirtgexLDLGE---GYAIeakqvdvdgekvwleftk 142 DSSP LLL---lllLEEELEEEEEEEEEeeellleEEEEL---LEEEeeeeellllleeeeeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 276 ident Sbjct dgefvddeiisvstaddeantwdvelddiededdvvvlkvhvnqvfqgavdsiaqieglw 202 DSSP lleeeeeeeeelllllhhhheeeeeelllllllleeeeeeeeeeeeelllleeeeeeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 276 ident Sbjct lidyanaxtiesddefgnlddvsidgdtlkisnedtftltrdseeeigegxyfxiadtss 262 DSSP eelhhhleellllllllllleeeeelleeeeelllleelllleeeeeelleeeeelllll DSSP -----------l Query -----------i 277 ident Sbjct sdlryypyvekt 274 DSSP llleeeeeeeel
