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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2bw3-A 7.9 3.8 135 518 13 PDB MOLECULE: TRANSPOSASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=2bw3A Z-score=7.9
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct shxqsrelktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidxikffikvkaeygehv 60 DSSP llllllllllllhhhhhhhhhhhhhhhhhllllhhhhhlhhhhhhhhhhhhhhhhhllll DSSP --------LLLH-HHHHHHHHHHHHHHHHHHLLH-HHHLEEEEEEEEELLL-LLEEEEEE Query --------SPKT-EWLDRVKSDISLQLKDTEKEW-VTTGCTIIAEAWTDNK-SRALINFS 49 ident | | |||| | Sbjct nveellpsPITLsRKVTSDAKEKKALIGREIKSAvEKDGASATIDLWTDNYiKRNFLGVT 120 DSSP lhhhhlllHHHHhHHHHHHHHHHHHHHHHHHHHHhHLLLLEEEEEEEEELLlLEEEEEEE DSSP EELL----LLEEEEEEEEL-LLLLlLHHHHHHHHHHHHH---HHLLLLEeEEEELhhHLL Query VSSP----SRIFFHKSVDA-SSYFkNSKCLADLFDSVIQ---DIGQEHIvQIIMDnsFCY 101 ident | | | Sbjct LHYHenneLRDLILGLKSLdFERS-TAENIYKKLKAIFSqfnVEDLSSI-KFVTD--RGA 176 DSSP EEEEelleEEEEEEEEEEElHHHL-LHHHHHHHHHHHHHlllLLLLLLL-EEEEL--LLH DSSP L--LHHHhhhhhlllLEEEELHHHHHHHHHHHHHH-LHHHHHHHH--------------- Query T--GISNhllqnyatIFVSPCASQCLNIILEEFSK-VDWVNQCIS--------------- 143 ident | | | || | | Sbjct NvvKSLA-------nNIRINCSSHLLSNVLENSFEeTPELNXPILacknivkyfkkanlq 229 DSSP HhhHHLL-------lLEEEELHHHHHHHHHHHHHHhLHHHHHHHHhhhhhhhhhhhlllh DSSP ----------------------------------------------hHHHL--------- Query ----------------------------------------------qAQVI--------- 148 ident Sbjct hrlrsslksecptrwnstytxlrsildnwesviqilseagetqrivhINKSiiqtxvnil 289 DSSP hhhlllllllllhhhlhhhhhhhhhhhlhhhhhhhhhhlllhhhlllLLHHhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 148 ident Sbjct dgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiween 349 DSSP hllhhhhhhhlllllllhhhhhhhhhhhhhhllllllllhhhhhhhhhhhhhhhhllhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 148 ident Sbjct lsiwhytafffyppalhxqqekvaqikefclskxedlelinrxssfnelsatqlnqdist 409 DSSP llhhhhhhhhllhhhlllllllhhhhhhhhhhhhhhhhhhhhhhhllllllllllllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 148 ident Sbjct tsfffpqltqnnsreppvcpsdefefyrkeivilsedfkvxewwnlnskkypklsklals 469 DSSP hhhhlhhhhhhhhhlllllhhhhhhhhhlllllllllllhhhhhhhlllllhhhhhhhhh DSSP ------------------------------------------------- Query ------------------------------------------------- 148 ident Sbjct llsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck 518 DSSP hhlllllllllhhhhhhlhhhhhlllllllhhhhhhhhhhhhhhhhhll
