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<TITLE>Dali: PF04833</TITLE><A name=s001A>
<h1>Results: PF04833</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="YVAVVTMSNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSSAVSSFQVSIGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDKRRKTQALMTWNVTCTYS"> 
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<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6qfsA sequence=gcqvlwgvnqwntgFTANVTVQNTSSAPVQGWTLTFSFPSGQQVTQAWSSTVTQSGSAVTVQNAPWNGSIPAGGTAQFGFNGSWTGTNAAPTAFSLNGTPCTVG dssp=lleeeeeeeellleEEEEEEEELLLLLLEELLEEEEELLLLLEEEEEELEEEEEELLEEEEEELLLLLEELLLLEEEEEEEEELLLLLLLLLLEEELLEEEEEL qstarts=0,13,19,56,81,95,106,113,127 sstarts=14,26,30,53,65,73,83,87,97 lengths=12,4,23,12,8,10,4,10,6 u=-0.234650,0.295391,-0.926112,-0.820482,-0.571093,0.025732,-0.521296,0.765896,0.376370 t=-8,21,-18 segments=17-28,29-32,33-55,56-67,68-75,76-85,86-89,90-99,100-105 compnd=_EXOGLUCANASE/XYLANASE;>"   <A HREF=#alignment-1>1</A>:  6qfs-A  8.4  2.4   89   104   21 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6qfs&u=-0.234650,0.295391,-0.926112,-0.820482,-0.571093,0.025732,-0.521296,0.765896,0.376370&t=-8,21,-18">PDB</A>  MOLECULE: EXOGLUCANASE/XYLANASE;                                     

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6qfsA Z-score=8.4</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  --------------LEEEEEEELLLLlLLLLllLLEEEEELLLLLEEEEEELEEELllll
Query --------------YVAVVTMSNFQMfRHIMnpGWTLGWTWAKKEVIWSMVGAQTTeqgd   46
ident                 | ||  |          ||||                  |    
Sbjct gcqvlwgvnqwntgFTANVTVQNTSS-APVQ--GWTLTFSFPSGQQVTQAWSSTVT----   53
DSSP  lleeeeeeeellleEEEEEEEELLLL-LLEE--LLEEEEELLLLLEEEEEELEEEE----


DSSP  llllllllllLLLLLLEEEELLllllhhhllllllLLLLLLLLllllllLEEEEEEEEEl
Query cskfkgnvphCCKKTPTVVDLLpgvpynqqfsnccKGGVVAAWgqdpssAVSSFQVSIGl  106
ident                 ||                   |   |           |      
Sbjct ----------QSGSAVTVQNAP-------------WNGSIPAG------GTAQFGFNGS-   83
DSSP  ----------EELLEEEEEELL-------------LLLEELLL------LEEEEEEEEE-


DSSP  LLLLlllLLLLEEEEEEllllLEEELLleeellleeelllllleeellleeelleeel
Query AGTSnktVKLPKNFTLLgpgpGYTCGPakvvpstvfltpdkrrktqalmtwnvtctys  164
ident           |  | |     |  |                                 
Sbjct WTGT---NAAPTAFSLN----GTPCTV------------------------------g  104
DSSP  LLLL---LLLLLLEEEL----LEEEEE------------------------------l


</PRE>
</PRE>
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<H1>PF04833</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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