Results: PF04765
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2vs3-A 10.6 3.4 181 287 7 PDB MOLECULE: N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFE
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=2vs3A Z-score=10.6
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DSSP lllllllllllllllllllllllllhhhhhhhhllllllhhhhhllllllllllllhhhl Query lphivndtpphtensrfnlftgyqtltereesfkvnflsiyismkksvtvhcgfynengg 60 ident Sbjct ----------------------------klklsdwfnpfkrpevvtmtkwkapvvwegty 32 DSSP ----------------------------lllhhhlllhhhllllllllllllleelllll DSSP llllhhhhhhhhhlLEEEEEEELLLL---LLLL---LLLLLlhhHHHHEEEEEEELHhhH Query frvsdvdreymrscEVVVATCAFGGG---DDLH---QPIGMtenSIRKVCYVAFWDEvtR 114 ident | | | | | Sbjct nravldnyyakqkiTVGLTVFAVGRYiehYLEEfltSANKH-fmVGHPVIFYIMVDD--V 89 DSSP lhhhhhhhhhhlllLEEEEEEELLLHhhhHHHHhhhHHHHH-llLLLLEEEEEEELL--H DSSP HHHhlllLLLLllleelLEEEEELLlLLLL--LHHHHLHHHHHLHHH-HLLL-LLEEEEE Query AAQeeegHTISedlvigLWRIILVSdLPFS--DQRLNGKIPKLISHR-LFPM-ARYSIWV 170 ident | | Sbjct SRM----PLIE-lgplrSFKVFKIK-PEKRwqDISMMRMKTIGEHIVaHIQHeVDFLFCM 143 DSSP HHL----LLLL-lllleEEEEEELL-LLLLhhHHHHHHHHHHHHHHHhLHHHlLLEEEEE DSSP LLLEEELLLhhhHHHHHLllllLLEEEEELLLL-------LLHHhhhhhhhhlllllhhh Query DSKSQFRRDplgVLEALLwrsnSSLALSEHGAR-------SSLYdeakaivkkhkatpee 223 ident | | | Sbjct DVDQVFQDK---FGVETL----GESVAQLQAWWykadpndFTYE---------------r 181 DSSP LLLEEELLL---LLHHHL----LLEEEEELLLLllllhhhLLLL---------------l DSSP HHHHhhhhhhllLLLLLEelleeLLEEEEEEEEELLhHHHHHHHHHHHHHHHL------- Query VEVQldqyrrdgIPDEKRfngkkALAEASVIVRNHApLTNLFMCAWFNEVVRF------- 276 ident | | | Sbjct RKES----aayiPFGEGD-----FYYHAAIFGGTPT-QVLNITQECFKGILKDkkndiea 231 DSSP LLLL----llllLLLLLL-----LLEEEEEEEELHH-HHHHHHHHHHHHHHHHhhlllll DSSP llLHHHHHHHHHHHHLlllEEEELHHHHH------------HHEEELLL--------- Query tsRDQLSFPYVLRRLRppgVHLFPVCARK------------DLVNSFGH--------- 313 ident Sbjct qwHNESHLNKYFLLNK--pTKILSPEYCWdyhiglpadiklVKMSWQTKeynvvrnnv 287 DSSP llLHHHHHHHHHHHLL--lLEEELHHHLLlhhhllllllllLLEEELLLlhhhhllll
