Results: PF04724
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6e4q-A 10.7 3.8 177 505 10 PDB MOLECULE: POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 9;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6e4qA Z-score=10.7
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DSSP -----llllhhhhhhhhlhhhhhhhhhhhhhhhhhhhhhhhlllllllleeellLLLLLL Query -----rgldvktyifmfavipmcvfgfyihgqkisyflrplwekapkpfnviphYYNENV 55 ident Sbjct gggpgelgkpvrlpkemsdemkkavddgwtknafnqyvsdlisvhrtlpdprdaWCKDEA 60 DSSP lllllhhhllllllllllhhhhhhhhhhhhhhlllhhhhhhllllllllllllhHHHHLL DSSP LHhhhhhhlllllLLLLLLEEEEEEELLL-HHHHHHHHHHHLL-----LLLEEEEEEELl Query TMenlcrlhgwgvREYPRRVYDAVLFSNE-LEILTLRWKELYP-----YITEFVVLESNs 109 ident | || | | Sbjct RY-----------LTNLPKTDVIICFHNEaWTVLLRTVHSVLDrspehLIGKIILVDDY- 108 DSSP LL-----------LLLLLLEEEEEELLLLlHHHHHHHHHHHHHhllhhHEEEEEEELLL- DSSP llllllLLLHHHHL-HHHHLLlHHHEEEEEELLlllllllhhHHHHHHHHHHHHHHHhll Query tftglpKALVFNSN-REQFKFvEPRLTYGTIGGrfkkgenpfVEEAYQRVALDQLLKiag 168 ident | | | | Sbjct -----sDMPHLKRQlEDYFAA-YPKVQIIRGQK--------rEGLIRARILGANHAK--- 151 DSSP -----lLLHHHLHHhHHHLLL-LLLEEEELLLL--------lLHHHHHHHHHHHLLL--- DSSP llllLEEEELLLLEEELHHHHHHHHH--LLLLLLEEEEEEEEEELLlLEEEEE------- Query itddDLLIMSDVDEIPSAHTINLLRW--CDEVPSILHLQLKNYLYSfEFRVDD------- 219 ident | | | Sbjct ---sPVLTYLDSHCECTEGWLEPLLDriARNSTTVVCPVIDVISDE-TLEYHYrdsggvn 207 DSSP ---lLEEEELLLLEEELLLLHHHHHHhhHHLLLEEEEEEEEEELLL-LLLEELllhhhle DSSP ----------------------------------eelLLEEEELL--LLLLL-------- Query ----------------------------------kswRASIHRYE--TGKTR-------- 235 ident | Sbjct vggfdwnlqfswhpvpererkrhnstaepvysptmagGLFSIDREffDRLGTydsgfdiw 267 DSSP eeeeellleeeeeellhhhhllllllllleellllllLLEEEEHHhhHHLLLllllllll DSSP -lllLLLL---------LEEEE-eEEEEEELllllhhhhhhHHHHlllHHHL-------- Query -yahYRQS---------DDILA-dAGWHCSFcfrrisdfifKMKAyshYDRV-------- 276 ident | | | | Sbjct ggenLELSfktwmcggtLEIVPcsHVGHIFR--------krSPYK---WRNVlkknsvrl 316 DSSP llhhHHHHhhhhhllleEEEEEeeEEEEELL--------llLLLL---LLLLlhhhhhhh DSSP ------------------------------------------------llhhhhlhhhhh Query ------------------------------------------------rfshylnperiq 288 ident Sbjct aevwmdeysqyyyhrigndkgdwgdvsdrrklrndlkcksfkwyldniypelfipgdsva 376 DSSP hhhhlhhhhhhhhhhlllllllllllhhhhhhhhhlllllhhhhhhhlllllllhhhlle DSSP hhhhhlllllllllllllHHHHHH------------------------------------ Query kvickgtdlfdmlpeeytFRDIIG------------------------------------ 312 ident Sbjct hgeirnlgyggrtcldapAGKKHQkkavgtypchrqggnqywmlskageirrddscldya 436 DSSP eeleeelllllleeeellLLLLLLlllleeeelllllhhhleeellllleeelleeeeel DSSP ---------------------------------hllllllllllllllhhhhhlhhhhhh Query ---------------------------------kmgpiphsysavhlpafllensdkykf 339 ident Sbjct gkdvtlfgchggkgnqfwtyrentkqlhhgtsgkclaiseskdkllmeecsaslsrqqwt 496 DSSP llleeeeelllllhhhleeeelllleeeellllleeeelllllleeeellllllhhhlee DSSP hllllllll Query llpgnckre 348 ident Sbjct lenydsskl 505 DSSP ellllhhhl
