Results: PF04709
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6sf2-F 6.0 3.9 116 156 20 PDB MOLECULE: SERINE/THREONINE-PROTEIN KINASE RECEPTOR R3;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6sf2F Z-score=6.0
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DSSP lHHHHhHHHHHHHLlllhhhhhhllllllhhhlhhhhhhhhhhhhlLLLL-LLLEEEEEE Query nSYEYaFLEAVQESrwgpqdlatfgvsstdsqatlpalqrlgawlgETGE-QQLLVLHLA 59 ident | Sbjct -EPPQ-YMIDLYNR----------------------------ytsdTTPAsNIVRSFSME 30 DSSP -LLLH-HHHHHHHH----------------------------hhllLLLLlLEEEEEELL DSSP EEEELL----LEEEEELLLLLLlllLLLEEEEEEELLL-----lLLEEEEELL------- Query EVIWEP----ELLLKFQEPPPGgasRWEQALLVLYSGP-----gPQVTVTGTG------- 103 ident | | | | | | || | Sbjct DAISITfpfqKHILLFNISIPR-heQITRAELRLYVSCqnhshdLKGSVVIYDvldgtkt 89 DSSP EEEEELllleEEEEELLLLLLL-llEEEEEEEEEEEELllllllLLEEEEEEElllllll DSSP lLLLEEELLllllLEEEEEEELLL-----hhhHLLLEEEEEEELLL-LLLLlhhhhhhhh Query lRGTQNLCPtrdtRYLVLTVDFPA-----gawSGFGLILTLQPSRE-GATLsidqlqafl 157 ident | | | | | | | || Sbjct fLVSQDIQD---eGWETLEVSSAVkrwvrsdsSKNKLEVTVESHRKgCDTL--------- 137 DSSP eEEEEEELL---lEEEEEELHHHHhhhhllllLLLEEEEEEEELLLlLLLL--------- DSSP hlllllllLLLLLEEEEELLLLllllllllllllllllllllllllllllllllhhhhhh Query fgsdsrcfTRMTPTLVVLPPAEpspqpahgqldtmpfpqpglslepealphsadpfletl 217 ident | | || Sbjct ---disvpPRNLPFFVVFSNDH-------------------------------------- 156 DSSP ---eelllLLLLLEEEEEEELL-------------------------------------- DSSP hhhhhhhhllllllllllllllhhhhhhllllllllllhhhhhhhhhlllllllllllll Query trlvralrgpltqasntqlaldpgalasfpqglvnlsdpaalgrlldweeplllllspta 277 ident Sbjct ------------------------------------------------------------ 156 DSSP ------------------------------------------------------------ DSSP llllllllllllllllllhhhhhhhhhhhhhhhhhhhhlllllllhhhhhhhhhhhllll Query aterepirlhgpasapwaaglqrrvavelqaaaselrdlpglpptappllarllalcpnd 337 ident Sbjct ------------------------------------------------------------ 156 DSSP ------------------------------------------------------------ DSSP llllllhhhhhhhhhhhhhhhhhhhhhl Query srssgdplrallllkalqglraewhgre 365 ident Sbjct ---------------------------- 156 DSSP ----------------------------
