Results: PF04293
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3o0y-C 13.2 3.3 184 585 14 PDB MOLECULE: LIPOPROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=3o0yC Z-score=13.2
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct isskqqlaslylqakqslfkqralsatmyglsqkdigqvissdmefyspenekqlraell 60 DSSP llhhhhhhhhhhhhhhhhhhllhhhhhhhlllhhhhllllllllllllhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct sisntiagiklddadittknnqqvmagltryfagepnfnigyidtwmglspfivnqingp 120 DSSP hhhhhhhhlllllllhhhhhhhhhhhhhhhhhhlllllllleeellleeelllllllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct lidiprvmqndqpittekealdyivrlgqfdklaatiiekqtadaaqnwlpskvtlqgai 180 DSSP hhhhhhhhhhllllllhhhhhhhhhhhllhhhhhhhhhhhhhhhhhllllllhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct kylkgftsgsaeqhpfvnvfrekiekvdsltteqkqslitqviakvsqvvypayqsveka 240 DSSP hhhhhhllllhhhlhhhhhhhhhhlllllllhhhhhhhhhhhhhhhhhlhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct seqllsearsesgiwaqpkgsvyyqdaikqlgdselsptqihqigldevarisgvmneil 300 DSSP hhhhlllllllllhhhlllhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhhh DSSP --------------------------------lLLHHHHHHHHHHHHHHHHHLL--lllL Query --------------------------------dWTFDLLDVYLAEIDRVAKLYR--ldtY 26 ident | | | Sbjct laqgytkgtvgermvalneeprflyedsiagreELLSDINGYITEVTAKMAPVFrttpsY 360 DSSP hhlllllllhhhhhhhhhllhhhlllllhhhhhHHHHHHHHHHHHHHHHLHHHLlllllL DSSP LEEEEEEL---HHHHhhhhhllllllllllhhhhhhhhhhhhhhhllllllLLEEEELL- Query PHQIEVIT---SEQMmdayssvgmpinyphwsfgkkfieterlykhgqqglAYEIVINS- 82 ident Sbjct QVEVKSFPvevQDGA------------------------------------PGGQYTSPa 384 DSSP LEEEEELLlllLLLL------------------------------------LLEEEELLl DSSP ----LLEEEEEEL----LLLHHHHHHHHHHHLL-HHHHHHHHLhHHHHHlllllhhhhhh Query ----NPCIAYLME----ENTITMQALVMAHACY-GHNSFFKNNyLFRSWtdassivdyli 133 ident | | | | || | | Sbjct vdgsKPGIYWINLrdmkANPKFGLKTLTYHEANpGHHWQIALN-LDQAE----------- 432 DSSP llllLLEEEEELLllhhHLLHHHHHHHHHHHLLlLHHHHHHHH-HLLLL----------- DSSP hhhhhhhhhhhhhlhhhhhhhhhhhhhlhhhhlllllllllllhhhhhhhhhhhhhhhhh Query farkyiteceerygvdeverlldschalmnygvdrykrpqkislqeekarqksreeylqs 193 ident Sbjct ------------------------------------------------------------ 432 DSSP ------------------------------------------------------------ DSSP hhhhhllllllllllllllllllllllllllhhhhhhhhlllllhhhhhhhhhhhhhhHH Query qvnmlwrtlpkreeektvaearrypsepqenllyfmeknaplleswqreilrivrkvsQY 253 ident Sbjct ---------------------------------------------------------lPF 435 DSSP ---------------------------------------------------------lLH DSSP HLLHHHLHHHHHHHHHHHHHHHHH-HHHHlllLLHHHHHHHHHHHHHH-LLLL--LLLLL Query FYPQKQTQVMNEGWATFWHYTILN-HLYDegkVTERFMLEFLHSHTNV-VFQP--PYNSP 309 ident |||| | | | | Sbjct LRRIAPYNAYTEGWALYSEQVAYElGMYE---NDPFGDLGRLQAELFRaVRLVvdTGLHD 492 DSSP HHHLLLLHHHHHHHHHHHHHHHHHlLLLL---LLHHHHHHHHHHHHHHhHHHHhhHHHHL DSSP -------------------------------lLLLL-LHHHHHHHHHHHHHHHHHLLlhh Query -------------------------------wYSGI-NPYALGFAMFQDIKRICQSPtee 337 ident | | || Sbjct krwtreqaisymseqtgtaesdvvaeierymaWPGQaLGYKLGMLKILSLREQAKAR--- 549 DSSP llllhhhhhhhhhhhllllhhhhhhhhhhhhhLLLHhHHHHHHHHHHHHHHHHHHHH--- DSSP hhhhlllllLLLHHHHHHHHHHH--LLHHHHHHHHllhhhhhhllleeeellllllllee Query dkywfpdiaGSDWLETLHFAMRD--FKDESFISQFlspkvmrdfrfftvldddrhnylei 395 ident | | Sbjct ------lgdKFDLAEFHDVVLLNgaVPMAVLSRNV------------------------- 578 DSSP ------hhhHLLHHHHHHHHHLLllLLHHHHHHHH------------------------- DSSP eeelllllhhhhhhhhhhhllhhhhlllllllllllll Query saihneegyreirnrlssqynlsnlepniqiwnvdlrg 433 ident Sbjct -------------------------------nhwldnk 585 DSSP -------------------------------hhhhhll
