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<TITLE>Dali: PF03942</TITLE><A name=s001A>
<h1>Results: PF03942</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="jobid" VALUE=PF03942>
<input TYPE="hidden" NAME="query_sequence" VALUE="RAVCSSGCGRPSTVCLCPYLPATPLPTSTTVVVLHHPHALRRNPLSTLPLLARSLSNLRLIPGRRLLPSSGPLIPNPVLLLFPSPGAADLASWCRSTPPAARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGKLVVKKEPHKGCVSTMEAVARALRLLEPEGRGAEIEETMVGVLRAMVAFQA"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLLLLHHHLLHHHLLLLLLLLLLEEEEEELLLLLLLLLLLLHHHHHHHLLLEEEEELLLLLHHHLLLLLLLEEEELLLLLLEEHHHHHHHLLHHHHLLLEEEEEELLHHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLHHHLHHHHHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="202   22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   209   210   211   212   213   214   215   216   217   218   219   220   221   222   223 
">
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<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5apgA sequence=XIPRVFIYRLPQDDPRKNTAIKLVRFGFAQLVDSiKALPsGSIILDPTVKTPLTPSDRVIAesrGLSLIDCSWKRAVDVHTKFIRGKFIRRRLPLlIAANPTHYgKPYILSTIEAVAAALYIXGFKDEAXEVLRLYKWGPNFIIINQKYLERYAAGDLSPERELLGVDDVDNGLEQLXRVLTNGX dssp=LLLLEEEEELLLLLLLLLHHHHHHHLLLLEEELLhHHLLlLLEEELLLLLLLLLHHHHHHHhhlLEEEEELLHHHHHHHHHHHLLLLLEEELLLLlLLLLLLLLlLLLLLLHHHHHHHHHHHLLLHHHHHHHHLLLLLLLHHHHHHHHHHHHHLLLLLLHHHHHHLLLLHHHHHHHHHHHHHLLL qstarts=26,41,56,70,76,85,101,105,128,145,154,159,182 sstarts=0,13,27,35,40,48,57,64,84,96,100,105,124 lengths=13,14,7,4,8,9,4,20,11,4,4,19,14 u=-0.112462,-0.666273,0.737179,0.675419,0.492887,0.548518,-0.728808,0.559592,0.394582 t=-78,-144,62 segments=1-13,14-27,28-34,36-39,41-48,49-57,58-61,65-84,85-95,97-100,101-104,106-124,125-138 compnd=_TSR3;>"   <A HREF=#alignment-1>1</A>:  5apg-A  9.8  2.7  131   185   21 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5apg&u=-0.112462,-0.666273,0.737179,0.675419,0.492887,0.548518,-0.728808,0.559592,0.394582&t=-78,-144,62">PDB</A>  MOLECULE: TSR3;                                                      

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5apgA Z-score=9.8</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllllllllhhhllhhhlllllllLLLEEEEEELLLLllLLLLLLHHHHHHHLlLEEE
Query ravcssgcgrpstvclcpylpatplpTSTTVVVLHHPHAlrRNPLSTLPLLARSLsNLRL   60
ident                               |     |         |   | |      |
Sbjct --------------------------XIPRVFIYRLPQD--DPRKNTAIKLVRFG-FAQL   31
DSSP  --------------------------LLLLEEEEELLLL--LLLLLHHHHHHHLL-LLEE


DSSP  EELllllhhhLLLLllLEEEELLLlLLEEHHHHHhhllhhhHLLL---EEEEEELLHHHH
Query IPGrrllpssGPLIpnPVLLLFPSpGAADLASWCrstppaaRANP---TLLLLDGTWKQA  117
ident             |       | |      |           |       | | |  || |
Sbjct VDS------iKALP-sGSIILDPT-VKTPLTPSD-------RVIAesrGLSLIDCSWKRA   76
DSSP  ELL------hHHLL-lLLEEELLL-LLLLLLHHH-------HHHHhhlLEEEEELLHHHH


DSSP  HHHHHHHHhhhLLLEEEEELLLllllllLLLLlllllLLLLlLLLLLLHHHHHHHHHHHH
Query KEMHAASLpflSSFAVPVSLPVdcgvdgDSMFegklvVKKEpHKGCVSTMEAVARALRLL  177
ident    |               ||                          || |||| ||   
Sbjct VDVHTKFI---RGKFIRRRLPL-----lIAAN-----PTHYgKPYILSTIEAVAAALYIX  123
DSSP  HHHHHHHL---LLLLEEELLLL-----lLLLL-----LLLLlLLLLLLHHHHHHHHHHHL


DSSP  LhhhlHHHHHHHHHHHHHH-----------------------------------------
Query EpegrGAEIEETMVGVLRA-----------------------------------------  196
ident                                                             
Sbjct G----FKDEAXEVLRLYKWgpnfiiinqkyleryaagdlsperellgvddvdngleqlxr  179
DSSP  L----LHHHHHHHHLLLLLllhhhhhhhhhhhhhllllllhhhhhhllllhhhhhhhhhh


DSSP  hhhhhl
Query mvafqa  202
ident       
Sbjct vltngx  185
DSSP  hhhlll


</PRE>
</PRE>
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<H1>PF03942</H1>
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