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<TITLE>Dali: PF03859</TITLE><A name=s001A>
<h1>Results: PF03859</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="EARSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWMLEPAYEHIVLVQYREV"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLHHHHHHHHHLHHHLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLEEEEEEEEEELLLLLLEEEEEEEELLLLLLLEEEEEEEEL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="115   13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=7k7wA sequence=hhhgtenlyfqgatmaaqsllsipveyrsqvwcranlpyPPAPQLPIPAVVDILTKAsQALPqisfsWTLIDQPPDGSLFLVWQAptLPSPPDGMHFMSNERFFNMDVAGKVLEIHEAkHGFYplsetrTMHVRCRYRLLGVGFDNFWLVHYFQGSETDSIPANISVAKPPHLRRYPLPDVKTSPFLLQ dssp=lllhhhhhhllllhhhhhhhhlllhhhlllleeeellllLLLLLLLHHHHHHHHHHHhHHHHhlleeEELLLLLLLLLEEEEELLllLLLLLLLLEELLLLEEEEEEELLEEEEEEEEeEEELllllllLLEEEEEEEEELLLLLLEEEEEEEELLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLL qstarts=1,19,25,45,63,75,84,89 sstarts=39,58,67,87,98,109,119,129 lengths=18,4,18,11,11,9,4,26 u=-0.297589,-0.466876,0.832747,-0.862836,0.504850,-0.025300,-0.408600,-0.726054,-0.553075 t=39,30,-4 segments=30-47,49-52,58-75,78-88,89-99,100-108,110-113,120-145 compnd=_SWI/SNF_AND_RSC_COMPLEXES_SUBUNIT_SSR4;>"   <A HREF=#alignment-1>1</A>:  7k7w-A  9.7  2.7  101   189   25 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=7k7w&u=-0.297589,-0.466876,0.832747,-0.862836,0.504850,-0.025300,-0.408600,-0.726054,-0.553075&t=39,30,-4">PDB</A>  MOLECULE: SWI/SNF AND RSC COMPLEXES SUBUNIT SSR4;                    

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=7k7wA Z-score=9.7</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  --------------------------------------lLLLLLLLHHHHHHHHHLH-HH
Query --------------------------------------eARSRWLKPSEVYYILQNH-ER   21
ident                                             |    |  ||      
Sbjct hhhgtenlyfqgatmaaqsllsipveyrsqvwcranlpyPPAPQLPIPAVVDILTKAsQA   60
DSSP  lllhhhhhhllllhhhhhhhhlllhhhlllleeeellllLLLLLLLHHHHHHHHHHHhHH


DSSP  LL---llLLLLLLLLLLLEEEEELLllLLLLLLLLLLLlllllllLLLEEEEEEELlEEE
Query FP---itPEPPKKPPSGSLFLYNRRvnRYFRRDGHAWRrkkdgrtVGEAHERLKVGnVDA   78
ident  |           || |||||           ||             |      |     
Sbjct LPqisfsWTLIDQPPDGSLFLVWQAptLPSPPDGMHFM-------SNERFFNMDVA-GKV  112
DSSP  HHhlleeEELLLLLLLLLEEEEELLllLLLLLLLLEEL-------LLLEEEEEEEL-LEE


DSSP  EEEEEE-ELLL-----lLLEEEEEEEELLLLLLLEEEEEEEEL-----------------
Query LSCYYA-HGEQ-----nPCFQRRCFWMLEPAYEHIVLVQYREV-----------------  115
ident |    | ||            |     |        || |                    
Sbjct LEIHEAkHGFYplsetrTMHVRCRYRLLGVGFDNFWLVHYFQGsetdsipanisvakpph  172
DSSP  EEEEEEeEEELllllllLLEEEEEEEEELLLLLLEEEEEEEELlllllllllhhhlllll


DSSP  -----------------
Query -----------------  115
ident                  
Sbjct lrryplpdvktspfllq  189
DSSP  lllllllllllllllll


</PRE>
</PRE>
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<H1>PF03859</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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