Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7duw-A 26.0 2.5 249 820 26 PDB MOLECULE: BIFUNCTIONAL LYSYLPHOSPHATIDYLGLYCEROL FLIPPASE/S
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7duwA Z-score=26.0
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DSSP ----------lhhhhhhhhhhhhhhhhhhhlLHHHHHHHHHHLLHHHHHHHHHHHHHHHH Query ----------iltwlffiavivllvvyakkvDWEEVWKVIRDYNRVALLSAVGLVVVSYL 50 ident | | | | Sbjct lnryralivavltvavfciaayaiydlttevRYDDVVHALTTTKISSVLLALLFTGLSFA 60 DSSP lhhhhhhhhhhhhhhhhhhhhhhhhhhllllLHHHHHHHHHLLLHHHHHHHHHHHHHHHH DSSP HHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHH-HLLHHHHHHHHHHHLLLHHH Query IYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTW-VGGIGMRYRLYSRLGLPGST 109 ident || | | | | | | || || | ||| | |||| Sbjct SLIFYDQNALEYIGKRLPFPHVALTSFSAYAVGNTAGFGaLSAGAIRYRAYTRLGLSPDD 120 DSSP HHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHLLLLLHhHLHHHHHHHHHHHHLLLHHH DSSP HHHHHHHHHHHHHHHHHHHHHHHHHH--LLLL-LLLLlllLHHHHHHHHHHHHHHHHHHH Query ITRIFSLSITTNWLGYILLAGIIFTA--GVVE-LPDHwyvDQTTLRILGIGLLMIIAVYL 166 ident ||| || | | || | | | Sbjct ITRVIAFVTLAFGLGLASVGAMALLViaDEIGpLISV---DGLWLRLIAIAILAALAFVV 177 DSSP HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHLhHHLL---LHHHHHHHHHHHHHHHHHHH DSSP HHHHhllLLEE-eelleeEELLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLL-LLHHHHH Query WFCAfakHRHM-tikgqkLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQS-VNYFFVL 224 ident || | | || Sbjct YAGR---NGREvrigpvaVRLPDSRTWSRQFLVTAFDIAASASVLYVLLPETsIGWPGFF 234 DSSP HHLL---LLLLeelllleELLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLlLLHHHHH DSSP HHHHHHHHHHHHHLLHHHLLHHHHHHHHHLLLLlLLHHHHHHHHHHHHHHHLHHHHHHL- Query GVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEhTSKGTIIAALLAYRVLYYFIPLLLA- 283 ident || | ||| || | || | | ||| | ||| | Sbjct AIYAIAVGLGVLSHVPAGFGVFETIIIAWLGSS-VNEDAVLSSLVLYRVIYNVIPLVIAi 293 DSSP HHHHHHHHHHHHLLLHHHLLHHHHHHHHHLLLL-LLHHHHHHHHHHHHHHHHHHHHHHHh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct aaisvaelrssmrrigarlmpqllsafalllgmmlvfssvtptpdhnlivlsdylplslv 353 DSSP hhhhhhhhllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhllhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct esahflssllglaiivaarglsqrldgawwvstfsalfalffsllkaiaiveagllaffv 413 DSSP hhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct fslvvsrrlfkrpasllnqtltagwltaiavvcigaivvlffvyrdvgysnelwwqfefa 473 DSSP hhhhhlhhhlllllllllllllhhhhhhhhhhhhhhhhhhhhhlllllllhhhhllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct deaprglraalgisivssaiaifsllvsddavaraveivrkqgvadanlvrmgdksimfs 533 DSSP llhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhlllhhhhhhhhllleeeel DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct ekgdafimygkqgrswialfdpvgprqalpdliwrfvetaraagcrsvfyqispallsyc 593 DSSP llllleeeeeeelleeeelllllllhhhhhhhhhhhhhhhhhllleeeeeeelhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct adaglrafklgelavvnlanfelkggkwanlrqtasravrdglefaviepqdipdvldql 653 DSSP hhlleeeeeeeeeeeeellllllllhhhhhhhhhhhhhhhlleeeeeelllllhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct ahvsdtwladhnakeksfslgafdpdyvcsqpvgvlkkdgkivafanilmtetkeegsvd 713 DSSP hhhhhhhhhhllllllllllllllhhhhhllleeeeeelleeeeeeeeelllllleeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 283 ident Sbjct lmrfspdapkgsmdflfvqileylkgegfqrfnlgmaplsgmsrresapvwdrvggtvfe 773 DSSP eeeelllllllhhhhhhhhhhhhhhhhllleeeeeeelllhhhhhllllllllhhhhhhh DSSP ----------------------------------------------- Query ----------------------------------------------- 283 ident Sbjct hgerfynfkglrafkskfhpewqprylavsggvspmialmdatflig 820 DSSP hhhhhllllllhhhhhlllleeeeeeeeeellllhhhhhhhhhhhhl
