Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1
: 7zva-A 28.1 1.3 208 335 51 PDB MOLECULE: C-TERMINAL PEPTIDASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7zvaA Z-score=28.1
back to top
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct arlankpkgtiktikgddgevvdcvdiykqpafdhpllknhtlqmqpsnkleqpwhknge 60 DSSP leelllllleeeeeellllleeeeeehhhlhhhhlhhhlllllllllllllllhhhhhll DSSP ----------------------------------------------------------LL Query ----------------------------------------------------------PS 2 ident Sbjct cpkgsipirrqvitglpvvkkqfptnhqyaviayfygnaslqganatiniwepnlknpNG 120 DSSP lllleeeeelleellllllllllllleeeeeeeeellllllleeeeeeelllllllllLL DSSP LEEEEEEEEEELLHHHLEEEEEEEEELHHHHLLLLLEEEEEEELLLLLLLLLLLLLLLLL Query EFSLSQTWIVSGDGTSRNTIEAGWQVYPGMYGNNDPRLFVYWTSDGYQKTGCYNLVCGGF 62 ident ||| | || | | | |||||||||||| | || | ||| ||| |||| | | || Sbjct DFSLTQIWISAGSGSSLNTIEAGWQVYPGRTGDSQPRFFIYWTADGYTSTGCYDLTCPGF 180 DSSP LEEEEEEEEEELLHHHLEEEEEEEEELHHHHLLLLLEEEEEEELLLLLLLLEELLLLLLL DSSP EELLLLLLLLLLLlLLLLLLLLLLLLLEEEEELLLLLLEEEEELLlEEEEEELHHHLLLL Query VQTTNQYTVGGSYvTASQYDGAQLVLNLLIWKDPKTGNWWLKINDnDVIGYWPGSLFNSL 122 ident ||| | | | | | | | || | || |||||| | |||| | || Sbjct VQTNNYYAIGMAL-QPSVYGGQQYELNESIQRDPATGNWWLYLWG-TVVGYWPASIYNSI 238 DSSP EELLLLLLLLLLL-LLLLLLLLLLEEEEEEEELLLLLLEEEEELL-EEEEEELHHHLLLL DSSP LLLLLEEEEEEEEELLLLLL--LLLLLLLLLLLHHHLLLLLEEELLLLEELLLLLEELLL Query GDGAIKVEWGGEIFAPTSDR--HTTTDMGSGHFAEEGIKKASYVKNIMIVDGTNALREPQ 180 ident || ||||||| |||| |||||| || ||||| || | Sbjct TNGADTVEWGGEIYDSSGTGgfHTTTQMGSGHFPTEGYGKASYVRDLQCVDTYGNVISPT 298 DSSP LLLLLEEEEEEEEELLLLLLllLLLLLLLLLLLHHHLLLLLEEEEEEEEELLLLLEELLL DSSP --LLLLLLLLLLLLEEEELLLLLllLLLEEEELL----- Query --GLYSYADNRNCYSVVPGNAGTsfGTHFFYGGP----- 212 ident | ||| ||||| Sbjct anSFQGIAPAPNCYNYQFQQGSS--ELYLFYGGPgcqai 335 DSSP hhHLEEELLLLLLLEEEEELLLL--LLEEEEELLlllll