Results: PF03080

Query: s001A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
1:  7zva-A 28.1  1.3  208   335   51 PDB  MOLECULE: C-TERMINAL PEPTIDASE;                                      


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=s001A Sbjct=7zvaA Z-score=28.1

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct arlankpkgtiktikgddgevvdcvdiykqpafdhpllknhtlqmqpsnkleqpwhknge   60
DSSP  leelllllleeeeeellllleeeeeehhhlhhhhlhhhlllllllllllllllhhhhhll


DSSP  ----------------------------------------------------------LL
Query ----------------------------------------------------------PS    2
ident                                                             
Sbjct cpkgsipirrqvitglpvvkkqfptnhqyaviayfygnaslqganatiniwepnlknpNG  120
DSSP  lllleeeeelleellllllllllllleeeeeeeeellllllleeeeeeelllllllllLL


DSSP  LEEEEEEEEEELLHHHLEEEEEEEEELHHHHLLLLLEEEEEEELLLLLLLLLLLLLLLLL
Query EFSLSQTWIVSGDGTSRNTIEAGWQVYPGMYGNNDPRLFVYWTSDGYQKTGCYNLVCGGF   62
ident  ||| | ||  | | | ||||||||||||  |   || | ||| |||  |||| | | ||
Sbjct DFSLTQIWISAGSGSSLNTIEAGWQVYPGRTGDSQPRFFIYWTADGYTSTGCYDLTCPGF  180
DSSP  LEEEEEEEEEELLHHHLEEEEEEEEELHHHHLLLLLEEEEEEELLLLLLLLEELLLLLLL


DSSP  EELLLLLLLLLLLlLLLLLLLLLLLLLEEEEELLLLLLEEEEELLlEEEEEELHHHLLLL
Query VQTTNQYTVGGSYvTASQYDGAQLVLNLLIWKDPKTGNWWLKINDnDVIGYWPGSLFNSL  122
ident ||| | |  |      | | | |  ||  |  || ||||||      | |||| |  || 
Sbjct VQTNNYYAIGMAL-QPSVYGGQQYELNESIQRDPATGNWWLYLWG-TVVGYWPASIYNSI  238
DSSP  EELLLLLLLLLLL-LLLLLLLLLLEEEEEEEELLLLLLEEEEELL-EEEEEELHHHLLLL


DSSP  LLLLLEEEEEEEEELLLLLL--LLLLLLLLLLLHHHLLLLLEEELLLLEELLLLLEELLL
Query GDGAIKVEWGGEIFAPTSDR--HTTTDMGSGHFAEEGIKKASYVKNIMIVDGTNALREPQ  180
ident   ||  |||||||         |||| ||||||  ||  |||||     ||       | 
Sbjct TNGADTVEWGGEIYDSSGTGgfHTTTQMGSGHFPTEGYGKASYVRDLQCVDTYGNVISPT  298
DSSP  LLLLLEEEEEEEEELLLLLLllLLLLLLLLLLLHHHLLLLLEEEEEEEEELLLLLEELLL


DSSP  --LLLLLLLLLLLLEEEELLLLLllLLLEEEELL-----
Query --GLYSYADNRNCYSVVPGNAGTsfGTHFFYGGP-----  212
ident        |   |||               |||||     
Sbjct anSFQGIAPAPNCYNYQFQQGSS--ELYLFYGGPgcqai  335
DSSP  hhHLEEELLLLLLLEEEEELLLL--LLEEEEELLlllll




PF03080

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