Results: PF03016
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 5f84-A 11.7 3.5 204 365 14 PDB MOLECULE: O-GLUCOSYLTRANSFERASE RUMI;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=5f84A Z-score=11.7
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DSSP --------------------lLLLHHHHHHHH---------------------------- Query --------------------iYRNPRAFHRSY---------------------------- 12 ident Sbjct nedefsfkirrqiekanadykPCSSDPQDSDCschanvlkrdlapykstgvtrqmiessa 60 DSSP lhhhhhhhhhhhhhhhhhlllLLLLLLLLLLLlllhhhhhhhhhhhllllllhhhhhhhh DSSP --hhhhhhlleEELLlllLLLLlLLLLllllhHHHHHHHHHHLllllLLLLlhhHLLEEe Query --lemerkfkiWTYRegePPLAhLGPSadiysIEGQFLEEIEDprnpFAARdpgEAHAFl 70 ident || | | Sbjct rygtkykiyghRLYR---DANC-MFPA-----RCEGIEHFLLP----LVAT---LPDMD- 103 DSSP hhleeeeeellEEEE---LLLL-LLHH-----HHHHHHHHHLL----LHHH---LLLEE- DSSP elllhhhhhhhllllllllllhhhhhhhhhhhhhhhhhlhhhhhhlllleEEEELLLLHH Query lpvsvcnlvhyiyrlnttaymahmrraladyvdvvahkypywnrsrgadhVIVSCHDWAP 130 ident | | Sbjct --------------------------------------------------LIINTRDYPQ 113 DSSP --------------------------------------------------EEELLLLLLL DSSP H-hhLLLHhhHHLLeEEELLLlHHHLLllllLEELL-----lLLLL------lLLLLL-- Query L-vsEANRelYANAiRVLCNAnTSEGFrprkDATLP-----eVNLA------dGLLRR-- 176 ident | | | | | Sbjct LnaaWGNA--AGGP-VFSFSK-TKEYR---dIMYPAwtfwagGPATklhprgiGRWDQmr 166 DSSP LlllLLLL--LLLL-LEELLL-LLLLL---lEELLLhhhlllLLLLlllllllLLHHHhh DSSP ---LLLL--LLHHHLLEEEEEELLLLHHHHHHHHhHHLLLLLLLEEEELL---------- Query ---PTLG--LPPENRTTLAFFAGGMHGHIRRALLgYWLGRKDPDMDIHEY---------- 221 ident | | || | | | | Sbjct eklEKRAaaIPWSQKRSLGFFRGSRTSDERDSLI-LLSRRNPELVEAQYTknqgwkspkd 225 DSSP hhhHHHHhhLLHHHLEEEEEEEELLLLHHHHHHH-HHHHHLLLLEEEEELlllllllhhh DSSP ----lllLLLHHHHHHHEEEEEEELLLLlLLLHHHHHHHHLLEEEEELLLLLLLLLllLL Query ----lpaGQDYHALMARARFCLCPSGFEvASPRVVESVFTGCVPVIISDGYPPPFSdvLD 277 ident | || | | | Sbjct tldapaaDEVSFEDHCKYKYLFNFRGVA-ASFRLKHLFLCKSLVFHVGDEWQEFFY-dQL 283 DSSP hllllllLLLLHHHHLLEEEEEEELLLL-LLLHHHHHHLLLLEEEEELLLLLLLLH-hHL DSSP HH-HLLEELLHHHHH-HHHHHHHLL----------------------------------- Query WS-KMSVTVPPARIP-ELKAVLKGV----------------------------------- 300 ident | | | Sbjct KPwVHYVPLKSYPSQqEYEHILSFFkkndalaqeiaqrgydfiwehlrmkdikcywrkll 343 DSSP LLlLLLEEELLLLLHhHHHHHHHHHhllhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhh DSSP ---------------------- Query ---------------------- 300 ident Sbjct kryvkllqyevkpedqliyigp 365 DSSP hhhhllllllllllllleeeel
