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<TITLE>Dali: PF01955</TITLE><A name=s001A>
<h1>Results: PF01955</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="EFKNKRKVLSTREGFKEVKYVGNHSIPVPFWDKVHNYKDYENQVLNKIGIKKEDIALLSTGANMDNLAVAKEEFDEFYVVAFTTAGAKHNAIRLGDEEADYIEKDFKTYKIVDGKIVPKEEIGTVNIILITNANLTDGAMARAIITITEAKTNAFQELNIRSTKHPELQATGTGTDNIVVVKGFGSGVDYTGGHTKMGEMIAKAVKRSV"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLEEEEELLLEEEEELEEEEEELLHHHLLLLLLHHHHHHHHHHHHLLLHHHEEEEEELLLHHHLEEEEEEELLEEEEEEEEEELLLLLLLLLLLLLLEEEELLEEEEEELLEEEELLLLLEEEEEEEELLEELHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEEEEELLLLLEELLLLLLLHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="209   35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   241   242   243 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5xyoA sequence=giavdpaprlagppggpgndafdlapvrstgremlrfdfpgvsigaahyeegptgatviHIPAGARTAVDArggavglsgGYDFNHAICLAGGagygLEAGAGVSGallrlehrtgfaelQLVSSAVIYdfsarstavypdkalgraalefavpgefpqgraGAGMsasagkvdwdrteitGQGAAFRRLGDVRILAVVVPNPVgvivdragtvvrgnydaqtgvrrHPVFDYqeafAEQVPTTISAIVTNVRMSPVELNQFAKQVHSSMHRGIQPFHTdmdGDTLFAVTTDEIDLpttpgssrgrlsvNATALGAIASEVMWDAVLEAGK dssp=llllllllllllllllllhhhllllleelllleeeelllllleeeeeeelllleeeeeeEEEEEEEEEEEElllllleelLLLEEEEEEEELLhhhhHHHHHHHHHhhllllllllhhhlLLEEEEELLllllllllllllhhhhhhhhhlleeleeeelllHHHHhleellllhhhleelLLEEEEEEELLEEEEEEEEELLLleeellllleeelleelllleelLHHHHHhhhhHHHLLLEEEEEEEEELLLHHHHHHHHHHHHHHLLLLEELLLLlllLLEEEEEEEEEELLlllllllllllllLHHHHHHHHHHHHHHHHHHHHL qstarts=0,12,17,40,47,52,61,65,93,110,123,169,174,189,196 sstarts=59,80,84,97,102,120,162,181,227,237,242,274,282,309,313 lengths=12,4,9,5,4,9,4,23,6,5,32,5,14,4,13 u=-0.877529,-0.194030,-0.438515,0.114771,0.802916,-0.584939,0.465587,-0.563630,-0.682313 t=2,39,-4 segments=76-87,97-100,101-109,114-118,119-122,138-146,180-183,199-221,245-250,255-259,267-298,299-303,307-320,334-337,338-350 compnd=_ENDO-TYPE_6-AMINOHEXANOATE_OLIGOMER_HYDROLASE;>"   <A HREF=#alignment-1>1</A>:  5xyo-A 11.0  4.5  149   331    6 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5xyo&u=-0.877529,-0.194030,-0.438515,0.114771,0.802916,-0.584939,0.465587,-0.563630,-0.682313&t=2,39,-4">PDB</A>  MOLECULE: ENDO-TYPE 6-AMINOHEXANOATE OLIGOMER HYDROLASE;             

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5xyoA Z-score=11.0</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  -----------------------------------------------------------L
Query -----------------------------------------------------------E    1
ident                                                             
Sbjct giavdpaprlagppggpgndafdlapvrstgremlrfdfpgvsigaahyeegptgatviH   60
DSSP  llllllllllllllllllhhhllllleelllleeeelllllleeeeeeelllleeeeeeE


DSSP  LLLLEEEEELL---------LEEEeELEEEEEELlhhhllllllhhhhHHHHHhhHLLL-
Query FKNKRKVLSTR---------EGFKeVKYVGNHSIpvpfwdkvhnykdyENQVLnkIGIK-   51
ident                                                             
Sbjct IPAGARTAVDArggavglsgGYDF-NHAICLAGG----------agygLEAGA--GVSGa  107
DSSP  EEEEEEEEEEElllllleelLLLE-EEEEEEELL----------hhhhHHHHH--HHHHh


DSSP  ------------hHHEEEEEEL---------------------------------LLHH-
Query ------------kEDIALLSTG---------------------------------ANMD-   65
ident                                                             
Sbjct llrlehrtgfaelQLVSSAVIYdfsarstavypdkalgraalefavpgefpqgraGAGMs  167
DSSP  hllllllllhhhlLLEEEEELLllllllllllllhhhhhhhhhlleeleeeelllHHHHh


DSSP  --------------HLEEEEEEELLEEEEEEEEEELL------------------lllll
Query --------------NLAVAKEEFDEFYVVAFTTAGAK------------------hnair   93
ident                   |          |                              
Sbjct asagkvdwdrteitGQGAAFRRLGDVRILAVVVPNPVgvivdragtvvrgnydaqtgvrr  227
DSSP  leellllhhhleelLLEEEEEEELLEEEEEEEEELLLleeellllleeelleelllleel


DSSP  LLLLLLleeeelleeeeEELLEeeelllllEEEEEEEELLEELHHHHHHHHHHHHHHHHH
Query LGDEEAdyiekdfktykIVDGKivpkeeigTVNIILITNANLTDGAMARAIITITEAKTN  153
ident                               |      ||                     
Sbjct HPVFDY-------qeafAEQVP--------TTISAIVTNVRMSPVELNQFAKQVHSSMHR  272
DSSP  LHHHHH-------hhhhHHHLL--------LEEEEEEEEELLLHHHHHHHHHHHHHHLLL


DSSP  HHhhllllllllllllLLLLL---LLEEEEELLLLLEE------------lLLLLllhHH
Query AFqelnirstkhpelqATGTG---TDNIVVVKGFGSGV------------dYTGGhtkMG  198
ident                          |    |                            |
Sbjct GI--------------QPFHTdmdGDTLFAVTTDEIDLpttpgssrgrlsvNATA---LG  315
DSSP  LE--------------ELLLLlllLLEEEEEEEEEELLlllllllllllllLHHH---HH


DSSP  HHHHHHHHHHL-----
Query EMIAKAVKRSV-----  209
ident           |     
Sbjct AIASEVMWDAVleagk  331
DSSP  HHHHHHHHHHHhhhhl


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</PRE>
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<H1>PF01955</H1>
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<H1>Dali logos </H1>
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