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<TITLE>Dali: PF01548</TITLE><A name=s001A>
<h1>Results: PF01548</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="VGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLA"> 
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<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4ld0B sequence=hmvvAGIDPGITHLGLGVVAVlKARLLHGEVVKTspqepakerVGRIHARVLEVLHRFRPEAVAVQeqffyrqnelaykVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAakeEVALMvrgilglkeaprpSHLADALAIALTHAFYarmgTAKPL dssp=lleeEEEELLLLEEEEEEEELlLLEEEEEEEEELlllllhhhhHHHHHHHHHHHHHHHLLLEEEEElllllllhhhhhhHHHHHHHHHHHHHHHLLLEEEELHHHHHHHHLlhhHHHHHhhhhlllllllllHHHHHHHHHHHHHHHHhhllLLLLL qstarts=0,8,18,30,54,86,93,109 sstarts=4,11,22,43,79,114,132,152 lengths=7,10,12,23,32,5,16,5 u=-0.876524,0.456373,-0.153069,-0.415591,-0.557031,0.719027,0.242880,0.693859,0.677915 t=68,-14,7 segments=4-10,11-20,27-38,48-70,84-115,124-128,142-157,162-166 compnd=_CROSSOVER_JUNCTION_ENDODEOXYRIBONUCLEASE_RUVC;>"   <A HREF=#alignment-1>1</A>:  4ld0-B 11.7  2.6  110   157   15 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4ld0&u=-0.876524,0.456373,-0.153069,-0.415591,-0.557031,0.719027,0.242880,0.693859,0.677915&t=68,-14,7">PDB</A>  MOLECULE: CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC;             

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4ld0B Z-score=11.7</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ----LEEEELLlLLEEEEEELL-LLLLEEEEEELL---------LHHHHHHHHHHHLLLL
Query ----VGIDAAItACHHIAIRDD-VGARSIRFSVEP---------TLAGLRTLTDKLSGYD   46
ident      |||  |                     |                      |    
Sbjct hmvvAGIDPGI-THLGLGVVAVlKARLLHGEVVKTspqepakerVGRIHARVLEVLHRFR   59
DSSP  lleeEEEELLL-LEEEEEEEELlLLEEEEEEEEELlllllhhhhHHHHHHHHHHHHHHHL


DSSP  LLEEEEE------------eLLLLHHHHHHHHHHHLLEEEELLHHHHHHHHH---HHLLL
Query DIDATVE------------pTSMTWLPLTIAVENAGDTMHMAGARHCARLRG---AIVGK   91
ident      |                        |   ||      |                 
Sbjct PEAVAVQeqffyrqnelaykVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAakeEVALM  119
DSSP  LLEEEEElllllllhhhhhhHHHHHHHHHHHHHHHLLLEEEELHHHHHHHHLlhhHHHHH


DSSP  -----------llLHHHHHHHHLLHHHHL----LLLLLllllhhhhhhhhhhhhhhhhhh
Query -----------skSDVIDAEVLTRASEVF----DLTPLtlptpaqlalrrsvirragavi  136
ident              |   ||                 ||                      
Sbjct vrgilglkeaprpSHLADALAIALTHAFYarmgTAKPL----------------------  157
DSSP  hhhhlllllllllHHHHHHHHHHHHHHHHhhllLLLLL----------------------


DSSP  hhhhhhhhhhhhl
Query danrswrrlmsla  149
ident              
Sbjct -------------  157
DSSP  -------------


</PRE>
</PRE>
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<H1>PF01548</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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