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<TITLE>Dali: PF00674</TITLE><A name=s001A>
<h1>Results: PF00674</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="SNNCIYPLIVSLLVLFLGPIFVLVICGLSRKRSLSKQLIQFCKEITENTPSSDPHDWEVVVANLNSYLYENKAWNTKNFFFNATDCEKMFRTTVLEPFSLKK"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2m3aA sequence=GPLGSVAKkiTWRKqDLDRLKRVIALKKPSASDADWTEVLRLLAKEGVVEPEVVRQIAITRLKWVEP dssp=LLLLLLLLllLLLHhHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLLLLL qstarts=20,26,32,36,76,81 sstarts=0,4,10,15,45,49 lengths=4,4,4,30,4,14 u=-0.073575,0.913618,-0.399861,0.045544,0.403607,0.913798,0.996249,0.049021,-0.071305 t=5,-9,12 segments=1-4,5-8,11-14,16-45,46-49,50-63 compnd=_PROTEIN_KNL-2;>"   <A HREF=#alignment-1>1</A>:  2m3a-A  5.3  3.0   60    67   18 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2m3a&u=-0.073575,0.913618,-0.399861,0.045544,0.403607,0.913798,0.996249,0.049021,-0.071305&t=5,-9,12">PDB</A>  MOLECULE: PROTEIN KNL-2;                                             

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2m3aA Z-score=5.3</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  llllhhhhhhhhhhhhhhhhHHHHhhHHHHhhHHHH-LHHHHHHHHHHHLLLLLHHHHHH
Query snnciyplivsllvlflgpiFVLVicGLSRkrSLSK-QLIQFCKEITENTPSSDPHDWEV   59
ident                       |            |  |      |    ||    ||  
Sbjct --------------------GPLG--SVAKkiTWRKqDLDRLKRVIALKKPSASDADWTE   38
DSSP  --------------------LLLL--LLLLllLLLHhHHHHHHHHHHHHLLLLLHHHHHH


DSSP  HHHHHHHhhhhllllllLLLLlLHHHHHHHHHHHLHhhhhlll
Query VVANLNSylyenkawntKNFFfNATDCEKMFRTTVLepfslkk  102
ident |   |                           |          
Sbjct VLRLLAK----------EGVV-EPEVVRQIAITRLK---wvep   67
DSSP  HHHHHHH----------HLLL-LHHHHHHHHHHHLL---llll


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<H1>PF00674</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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