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Lactobacillus crispatus 125-2-CHN demo

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AAI of Uniprot species

Species are grouped and coloured by genus. Literature suggests > 95 % identity at the species boundary. Matched fraction is maximal in completely sequenced genomes. Use Plotly option (at top right of plot area) to show closest data on hover and to autoscale or zoom.

AAI histograms of Uniprot species

1. Lactobacillus crispatus 125-2-CHN

Average amino acid identity = 1.000, Median amino acid identity = 1.00, Matched fraction = 0.991, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

2. Lactobacillus crispatus

Average amino acid identity = 0.986, Median amino acid identity = 1.00, Matched fraction = 0.944, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

3. Lactobacillus crispatus MV-3A-US

Average amino acid identity = 0.987, Median amino acid identity = 1.00, Matched fraction = 0.896, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

4. Lactobacillus crispatus FB077-07

Average amino acid identity = 0.984, Median amino acid identity = 1.00, Matched fraction = 0.869, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

5. Chlamydia trachomatis

Average amino acid identity = 0.978, Median amino acid identity = 1.00, Matched fraction = 0.793, Multiplicity = 1.0
Lineage: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia

6. Lactobacillus crispatus DSM 20584 = JCM 1185

Average amino acid identity = 0.976, Median amino acid identity = 0.99, Matched fraction = 0.792, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

7. Lactobacillus crispatus (strain ST1)

Average amino acid identity = 0.973, Median amino acid identity = 0.99, Matched fraction = 0.769, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

8. Lactobacillus crispatus CTV-05

Average amino acid identity = 0.982, Median amino acid identity = 1.00, Matched fraction = 0.746, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

9. Lactobacillus crispatus EM-LC1

Average amino acid identity = 0.976, Median amino acid identity = 0.99, Matched fraction = 0.691, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

10. Lactobacillus gallinarum

Average amino acid identity = 0.849, Median amino acid identity = 0.88, Matched fraction = 0.720, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

11. Lactobacillus amylovorus DSM 20531

Average amino acid identity = 0.851, Median amino acid identity = 0.88, Matched fraction = 0.686, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

12. Lactobacillus ultunensis DSM 16047

Average amino acid identity = 0.848, Median amino acid identity = 0.87, Matched fraction = 0.685, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

13. Lactobacillus helveticus

Average amino acid identity = 0.847, Median amino acid identity = 0.87, Matched fraction = 0.686, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

14. Lactobacillus amylovorus

Average amino acid identity = 0.852, Median amino acid identity = 0.88, Matched fraction = 0.678, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

15. Lactobacillus amylovorus DSM 16698

Average amino acid identity = 0.851, Median amino acid identity = 0.88, Matched fraction = 0.669, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

16. Lactobacillus kefiranofaciens

Average amino acid identity = 0.845, Median amino acid identity = 0.87, Matched fraction = 0.673, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

17. Lactobacillus amylovorus (strain GRL 1118)

Average amino acid identity = 0.850, Median amino acid identity = 0.88, Matched fraction = 0.668, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

18. Lactobacillus amylovorus (strain GRL 1112)

Average amino acid identity = 0.850, Median amino acid identity = 0.88, Matched fraction = 0.667, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

19. Lactobacillus kitasatonis DSM 16761 = JCM 1039

Average amino acid identity = 0.852, Median amino acid identity = 0.88, Matched fraction = 0.664, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

20. Lactobacillus gallinarum DSM 10532 = JCM 2011

Average amino acid identity = 0.853, Median amino acid identity = 0.88, Matched fraction = 0.660, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus