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Chlamydia pan proteome demo
AAI of Uniprot species
Species are grouped and coloured by genus. Literature suggests > 95 % identity at the species boundary. Matched fraction is maximal in completely sequenced genomes.
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AAI histograms of Uniprot species
1. Chlamydia trachomatis
Average amino acid identity = 0.994, Median amino acid identity = 1.00, Matched fraction = 0.942, Multiplicity = 1.0
Lineage: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia
2. Lactobacillus crispatus
Average amino acid identity = 0.936, Median amino acid identity = 1.00, Matched fraction = 0.079, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
3. Lactobacillus crispatus FB077-07
Average amino acid identity = 0.979, Median amino acid identity = 1.00, Matched fraction = 0.075, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
4. Chlamydia abortus
Average amino acid identity = 0.786, Median amino acid identity = 0.79, Matched fraction = 0.086, Multiplicity = 1.0
Lineage: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia
5. Lactobacillus crispatus MV-3A-US
Average amino acid identity = 0.970, Median amino acid identity = 1.00, Matched fraction = 0.065, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
6. Lactobacillus crispatus 125-2-CHN
Average amino acid identity = 0.971, Median amino acid identity = 1.00, Matched fraction = 0.060, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
7. Streptococcus pneumoniae
Average amino acid identity = 0.655, Median amino acid identity = 0.66, Matched fraction = 0.089, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
8. Lactobacillus crispatus CTV-05
Average amino acid identity = 0.974, Median amino acid identity = 1.00, Matched fraction = 0.059, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
9. Gardnerella vaginalis
Average amino acid identity = 0.929, Median amino acid identity = 0.99, Matched fraction = 0.059, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella
10. Firmicutes bacterium CAG:536
Average amino acid identity = 0.988, Median amino acid identity = 1.00, Matched fraction = 0.054, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; environmental samples
11. Lactobacillus crispatus DSM 20584 = JCM 1185
Average amino acid identity = 0.959, Median amino acid identity = 0.99, Matched fraction = 0.055, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
12. Mycobacterium abscessus subsp. abscessus
Average amino acid identity = 0.638, Median amino acid identity = 0.64, Matched fraction = 0.079, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus
13. Lactobacillus crispatus (strain ST1)
Average amino acid identity = 0.955, Median amino acid identity = 0.99, Matched fraction = 0.053, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
14. uncultured Clostridium sp.
Average amino acid identity = 0.550, Median amino acid identity = 0.53, Matched fraction = 0.089, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples
15. Actinomyces turicensis ACS-279-V-Col4
Average amino acid identity = 0.928, Median amino acid identity = 0.97, Matched fraction = 0.050, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces
16. Lactobacillus crispatus EM-LC1
Average amino acid identity = 0.954, Median amino acid identity = 0.99, Matched fraction = 0.048, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
17. Lactobacillus gallinarum
Average amino acid identity = 0.807, Median amino acid identity = 0.85, Matched fraction = 0.055, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
18. Gardnerella vaginalis 0288E
Average amino acid identity = 0.973, Median amino acid identity = 0.99, Matched fraction = 0.043, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella
19. Bacillus simplex
Average amino acid identity = 0.944, Median amino acid identity = 1.00, Matched fraction = 0.044, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
20. Gardnerella vaginalis (strain ATCC 14019 / 317)
Average amino acid identity = 0.978, Median amino acid identity = 0.99, Matched fraction = 0.043, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella