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AAI histograms Show top species with AAI values between and and matched fraction between and

AAI of Uniprot species

Species are grouped and coloured by genus. Literature suggests > 95 % identity at the species boundary. Matched fraction is maximal in completely sequenced genomes. Use Plotly option (at top right of plot area) to show closest data on hover and to autoscale or zoom.

AAI histograms of Uniprot species

1. Chlamydia trachomatis

Average amino acid identity = 0.994, Median amino acid identity = 1.00, Matched fraction = 0.942, Multiplicity = 1.0
Lineage: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia

2. Lactobacillus crispatus

Average amino acid identity = 0.936, Median amino acid identity = 1.00, Matched fraction = 0.079, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

3. Lactobacillus crispatus FB077-07

Average amino acid identity = 0.979, Median amino acid identity = 1.00, Matched fraction = 0.075, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

4. Chlamydia abortus

Average amino acid identity = 0.786, Median amino acid identity = 0.79, Matched fraction = 0.086, Multiplicity = 1.0
Lineage: Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia

5. Lactobacillus crispatus MV-3A-US

Average amino acid identity = 0.970, Median amino acid identity = 1.00, Matched fraction = 0.065, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

6. Lactobacillus crispatus 125-2-CHN

Average amino acid identity = 0.971, Median amino acid identity = 1.00, Matched fraction = 0.060, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

7. Streptococcus pneumoniae

Average amino acid identity = 0.655, Median amino acid identity = 0.66, Matched fraction = 0.089, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus

8. Lactobacillus crispatus CTV-05

Average amino acid identity = 0.974, Median amino acid identity = 1.00, Matched fraction = 0.059, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

9. Gardnerella vaginalis

Average amino acid identity = 0.929, Median amino acid identity = 0.99, Matched fraction = 0.059, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella

10. Firmicutes bacterium CAG:536

Average amino acid identity = 0.988, Median amino acid identity = 1.00, Matched fraction = 0.054, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; environmental samples

11. Lactobacillus crispatus DSM 20584 = JCM 1185

Average amino acid identity = 0.959, Median amino acid identity = 0.99, Matched fraction = 0.055, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

12. Mycobacterium abscessus subsp. abscessus

Average amino acid identity = 0.638, Median amino acid identity = 0.64, Matched fraction = 0.079, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus

13. Lactobacillus crispatus (strain ST1)

Average amino acid identity = 0.955, Median amino acid identity = 0.99, Matched fraction = 0.053, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

14. uncultured Clostridium sp.

Average amino acid identity = 0.550, Median amino acid identity = 0.53, Matched fraction = 0.089, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples

15. Actinomyces turicensis ACS-279-V-Col4

Average amino acid identity = 0.928, Median amino acid identity = 0.97, Matched fraction = 0.050, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces

16. Lactobacillus crispatus EM-LC1

Average amino acid identity = 0.954, Median amino acid identity = 0.99, Matched fraction = 0.048, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

17. Lactobacillus gallinarum

Average amino acid identity = 0.807, Median amino acid identity = 0.85, Matched fraction = 0.055, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

18. Gardnerella vaginalis 0288E

Average amino acid identity = 0.973, Median amino acid identity = 0.99, Matched fraction = 0.043, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella

19. Bacillus simplex

Average amino acid identity = 0.944, Median amino acid identity = 1.00, Matched fraction = 0.044, Multiplicity = 1.0
Lineage: Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus

20. Gardnerella vaginalis (strain ATCC 14019 / 317)

Average amino acid identity = 0.978, Median amino acid identity = 0.99, Matched fraction = 0.043, Multiplicity = 1.0
Lineage: Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella